PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA09g00160
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family NAC
Protein Properties Length: 162aa    MW: 18655.1 Da    PI: 9.8334
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA09g00160genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM135.53.6e-42111441128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                 l+pG+rF Pt+eelv +yL++k+egk+  ++++vi+ ++iy+++P++Lp+     +k+++++w+fF++ + ++a+g r++r t++gyWkatg+   v+s
  CA09g00160  11 LTPGYRFYPTEEELVGFYLRNKLEGKRvDDIQRVIPVINIYQYNPSQLPEmageVIKHDSEQWFFFIPIQDREARGGRPTRLTTHGYWKATGTPGYVYS 109
                 579************************5556778**************9546766666888********************99***************9 PP

         NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                 + +++ +g k+t+vfykgrap+g+kt+W m+ey++
  CA09g00160 110 SsNNRIIGGKRTMVFYKGRAPNGKKTQWKMNEYKA 144
                 877888***************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.28E-454151IPR003441NAC domain
PROSITE profilePS5100543.0211161IPR003441NAC domain
PfamPF023651.1E-2113143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MENITYANNV LTPGYRFYPT EEELVGFYLR NKLEGKRVDD IQRVIPVINI YQYNPSQLPE  60
MAGEVIKHDS EQWFFFIPIQ DREARGGRPT RLTTHGYWKA TGTPGYVYSS SNNRIIGGKR  120
TMVFYKGRAP NGKKTQWKMN EYKATTDDDG KVSFPTLKNN N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-271114315139Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016541520.11e-109PREDICTED: NAC domain-containing protein 90-like
SwissprotQ9FMR32e-61NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A1U8EDX21e-108A0A1U8EDX2_CAPAN; NAC domain-containing protein 90-like
STRINGSolyc09g010160.1.15e-85(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24942357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.19e-64NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]