PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA09g01310

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

GRF

Protein Properties

Length: 240aa MW: 27376.3 Da PI: 9.1566

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA09g01310	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	80.3	1.8e-25	168	212	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr+rsrk++e+ CA09g01310 168 DPEPGRCRRTDGKKWRCSRDVVSGHKYCERHVHRGRNRSRKPVET 212 79****************************************997 PP
2	QLQ	49.5	1.3e-17	102	138	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s+F+ aQ+q+L+ Q+l+yK+++a++PvP eLl i+k CA09g01310 102 SYFSLAQWQELELQALVYKHMLAGAPVPNELLHLIKK 138 79******************************98875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	5.4E-10	102	138	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	18.896	103	138	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	1.6E-12	103	136	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.417	168	212	IPR014977	WRC domain
Pfam	PF08879	1.5E-21	169	211	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MDFNMKQWRN EQKNESSSEE VKNTAKLPRL VLDLDSSYFS SCYPHSSSAT TGFSVSCSDN 60 TDTSVLPLFV SEPPTNNKLS AFTLSPDSTV LTATKLPRME SSYFSLAQWQ ELELQALVYK 120 HMLAGAPVPN ELLHLIKKSL INSSPYYNLP QQYHHYQQAC YWGRTNMDPE PGRCRRTDGK 180 KWRCSRDVVS GHKYCERHVH RGRNRSRKPV ETTTTAAPRX XXXXXXXXXX XXXXXXXSP*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. microRNA396-GRF1/GRF3 regulatory module acts as a developmental regulator in the reprogramming of root cells during cyst nematode infection, leading to the formation of the syncytium. {ECO:0000269\|PubMed:12974814, ECO:0000269\|PubMed:22419826}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). Up-regulated in response to cyst nematode infection. {ECO:0000269\|PubMed:15200956, ECO:0000269\|PubMed:19453503, ECO:0000269\|PubMed:20023165, ECO:0000269\|PubMed:22419826}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975448	4e-63	HG975448.1 Solanum pennellii chromosome ch09, complete genome.
GenBank	HG975521	4e-63	HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015161507.1	1e-105	PREDICTED: growth-regulating factor 3-like, partial
Swissprot	Q9SJR5	3e-58	GRF3_ARATH; Growth-regulating factor 3
TrEMBL	A0A2G3BIU0	1e-163	A0A2G3BIU0_CAPCH; Growth-regulating factor 3
STRING	Solyc09g009200.1.1	3e-92	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3283	21	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36400.1	3e-49	growth-regulating factor 3

Publications ? help Back to Top
Casadevall R,Rodriguez RE,Debernardi JM,Palatnik JF,Casati P Repression of growth regulating factors by the microRNA396 inhibits cell proliferation by UV-B radiation in Arabidopsis leaves. Plant Cell, 2013. 25(9): p. 3570-83 [PMID:24076976] Vercruyssen L, et al. ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development. Plant Cell, 2014. 26(1): p. 210-29 [PMID:24443518] Liu J,Rice JH,Chen N,Baum TJ,Hewezi T Synchronization of developmental processes and defense signaling by growth regulating transcription factors. PLoS ONE, 2014. 9(5): p. e98477 [PMID:24875638] Cao Y,Han Y,Jin Q,Lin Y,Cai Y Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa). Front Plant Sci, 2016. 7: p. 1750 [PMID:27933074]