PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA09g01630
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family Trihelix
Protein Properties Length: 540aa    MW: 58885.3 Da    PI: 7.613
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA09g01630genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix54.62.8e-17125211186
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 +W++  + +L+ea+ e+  +l+rg+l++ +We+v++ +  r ++ ++s +qCk+k +nl+kryk ++++++++   + s++p+f+q+e
  CA09g01630 125 EWSDTGIACLLEAYMEKFVQLNRGNLRGRDWEDVAAMVseRCEKQSKSVEQCKNKVDNLKKRYKLERHRMSNG-GITMSHWPWFKQME 211
                 5*************************************767778899************************99.556669*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.7E-20123213No hitNo description
Gene3DG3DSA:3.40.1160.101.6E-54264483IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536331.57E-41269483IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042541.66E-97271483No hitNo description
PfamPF006964.0E-18272483IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MASCDDDFSL LDNDAAANPA YHHQQPPFSA VRYKPLPPIS AVSPKNISGD DDENDDGDGS  60
YHIGVDPYEN DSNPFENSEK RTDREEISDN GTPYNNNNNS YKRSKISSSS SGGGGSGEYR  120
KDREEWSDTG IACLLEAYME KFVQLNRGNL RGRDWEDVAA MVSERCEKQS KSVEQCKNKV  180
DNLKKRYKLE RHRMSNGGIT MSHWPWFKQM EQIVGNLVAV KGGGGVSEED KAIVVMSGSS  240
SGRQSKRYGT AVAGPCGQIV KSKSSIGPRW RRVVLKISGA ALAGATPNTN DPNNIDPKVA  300
MLVAQEVSIA CRLGIEVAIV VGGRNFFCGD TWVTSTGLDR CTAYQIGMMA TVMNSILLQS  360
ALEKAGVQTR VQSAFSMPEL AEPYSRQRAM RHLEKGRVVI FGGIGAGTGN PLFSTDTAAA  420
LRASEIHADA LLKGINAEGV YICDPRNNNV AAEHISFRDL VSGGDSSPLD LMAVTLCEEN  480
AIPGPYLLYM LFTSPATILY FVMICFTCSC RFQSSRPWKH IKSIMRRAGG YTNRSNRTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A4e-462704839214Uridylate kinase
3ek5_B4e-462704839214Uridylate kinase
3ek5_C4e-462704839214Uridylate kinase
3ek5_D4e-462704839214Uridylate kinase
3ek5_E4e-462704839214Uridylate kinase
3ek5_F4e-462704839214Uridylate kinase
3ek6_A4e-462704839214Uridylate kinase
3ek6_B4e-462704839214Uridylate kinase
3ek6_C4e-462704839214Uridylate kinase
3ek6_D4e-462704839214Uridylate kinase
3ek6_E4e-462704839214Uridylate kinase
3ek6_F4e-462704839214Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754481e-99HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019250790.10.0PREDICTED: uncharacterized protein LOC109229713
TrEMBLA0A2G2YPJ30.0A0A2G2YPJ3_CAPAN; Uridylate kinase
STRINGXP_009802965.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87282427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.21e-170Trihelix family protein