PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA09g01650
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family Trihelix
Protein Properties Length: 311aa    MW: 35677.6 Da    PI: 6.0316
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA09g01650genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix43.77.2e-141503886
    trihelix 38 mrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86
                m+ergf +sp+qC++k+++lnkryk+++++ +k+ +++++++  +++ ++
  CA09g01650  1 MMERGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtACKVVENQCLLETMD 50
                89********************************5599999999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.6E-11176No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MMERGFYVSP QQCEDKFNDL NKRYKRVNDI LGKGTACKVV ENQCLLETMD HLSPKMKEEV  60
KKLLNSKHLF FREMCAYHNS CGHNNAAAAG AGANAGGASG SSVVAEAANS QAQKRCLHSS  120
ENANARIGAS SLVKVASGEN VDDEEDEEDE EDDDDEVSGA RGHDHDDHHH HEDDDDIDER  180
SRKRQRKLGT SSPMVQQLST ELANVVQDRE RSPLEKRQWM KTRMMQLEEQ HVGYMYQTFE  240
LQKQRLKWEK FISKKEREME REKLMNERKK LENERMVLLL KQKELELLDF LQYHPSNNNH  300
RNSDPSSVTG *
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754481e-131HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016552676.11e-166PREDICTED: putative mediator of RNA polymerase II transcription subunit 12
TrEMBLA0A2G2YPK90.0A0A2G2YPK9_CAPAN; Uncharacterized protein
STRINGXP_009788508.11e-147(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67102231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.18e-59sequence-specific DNA binding transcription factors