PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA09g01730
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 178aa    MW: 20278 Da    PI: 7.6567
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA09g01730genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.82.4e-121564149
                S---SHHHHHHHHHHHHHHHHHHHHHHHH.HHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSv.LCdaevaviifsstgklyey 49
                ++ien++ r vtfskR+ g+ KKA+ L     d++v +i +s++gk y +
  CA09g01730 15 EKIENETTRLVTFSKRKSGLYKKASKLVEkYDDVDVGIISYSPNGKPYSF 64
                57************************9852679************98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.4E-15767IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.857768IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.41E-19878IPR002100Transcription factor, MADS-box
PRINTSPR004049.8E-9929IPR002100Transcription factor, MADS-box
PfamPF003193.8E-171664IPR002100Transcription factor, MADS-box
PRINTSPR004049.8E-92944IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MSGRKYLGRK KIPIEKIENE TTRLVTFSKR KSGLYKKASK LVEKYDDVDV GIISYSPNGK  60
PYSFFHPTFD SVIGRFVSPD TQPSVDGRFF DANARIKVKE RRGELDKLDM VEKIISNQTP  120
DANDMENVWE YIDNVKEEDV TRLEEWLDLV DLKLNHKLRM LENGASSSTQ APPNGGF*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016541046.11e-128PREDICTED: agamous-like MADS-box protein AGL29
RefseqXP_016541047.11e-128PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLA0A1U8E1B61e-127A0A1U8E1B6_CAPAN; Uncharacterized protein
TrEMBLA0A1U8E3Q21e-127A0A1U8E3Q2_CAPAN; agamous-like MADS-box protein AGL29
STRINGSolyc03g007020.1.16e-53(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-20AGAMOUS-like 61