PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA09g02910
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 211aa    MW: 23929.9 Da    PI: 5.8011
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA09g02910genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.44.5e-10106150347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+ E+  ++++  ++G g+Wk+I+r+   +Rt+ q+ s+ qky
       CA09g02910 106 SWTELEHRSFLRGLDKYGRGDWKSISRYCVITRTPMQVASHSQKY 150
                      6***************************9989***********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.33E-71577IPR009057Homeodomain-like
SMARTSM007170.161970IPR001005SANT/Myb domain
PROSITE profilePS500904.2862368IPR017877Myb-like domain
PROSITE profilePS5129413.85699155IPR017930Myb domain
SuperFamilySSF466897.11E-15101155IPR009057Homeodomain-like
SMARTSM007173.5E-5103153IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.6E-14104153IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.6E-8106152IPR009057Homeodomain-like
CDDcd001671.95E-7106146No hitNo description
PfamPF002491.5E-8106150IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MLEPFLVYQK EMRTDRTCNS SFWTKEEDKI FEITLAIYFK DNNLLRRMEE ELPGKSGDDI  60
INYYNILLED VEAIDSGRVP IPNYPELQSI SNQNSEADVE RQRGASWTEL EHRSFLRGLD  120
KYGRGDWKSI SRYCVITRTP MQVASHSQKY FKHLKAVPKK NRRASILDIT SADAEAAGTS  180
QAMPSTNNES IFPRQSTNAE QIIAVAGGVA *
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016553526.11e-118PREDICTED: transcription factor DIVARICATA-like
TrEMBLA0A2G2YQI11e-156A0A2G2YQI1_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000043926e-95(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44541329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.11e-44MYB family protein