PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA09g02960

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

M-type_MADS

Protein Properties

Length: 149aa MW: 17047.5 Da PI: 9.7776

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA09g02960	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	49.2	6.5e-16	17	63	3	49
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +e++ ++t+skR++g++KKA+E S+L +a+v v+++ +gk + y CA09g02960 17 VEDNETHTTTLSKRKKGLFKKANEYSTLAGADVGVVLITASGKSHSY 63 6888899***********************************99988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	19.582	7	67	IPR002100	Transcription factor, MADS-box
SMART	SM00432	4.1E-18	7	66	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.31E-20	8	89	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.3E-13	9	29	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.2E-16	17	63	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.3E-13	29	44	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.3E-13	44	65	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 149 aa Download sequence Send to blast
MDKRTGKGRQ KIEMKLVEDN ETHTTTLSKR KKGLFKKANE YSTLAGADVG VVLITASGKS 60 HSYGSISIEK ITDKFLELKQ DDRQSDHDDV GKLDVFETFE DLRKEVQALN EKEKERIPDK 120 HRLEQLEVIK LRLDKIKKGK EKVLFYPS*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016541015.1	1e-100	PREDICTED: agamous-like MADS-box protein AGL29
TrEMBL	A0A2G2YQB3	1e-100	A0A2G2YQB3_CAPAN; Uncharacterized protein
STRING	XP_009779179.1	1e-39	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1780	12	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36590.1	3e-19	M-type_MADS family protein