PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA09g02990
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 165aa    MW: 18993.8 Da    PI: 10.1463
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA09g02990genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.55.4e-161665251
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 ie++    vt+skR++g+ KKA+E S+L++a+v v+++ ++gk + yss
  CA09g02990 16 LIEDNKAHIVTLSKRKKGLYKKAKEYSTLTGADVGVVLITPSGKPHFYSS 65
                6999999*************************************998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-19766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.156767IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.02E-23890IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-12929IPR002100Transcription factor, MADS-box
PfamPF003199.0E-181761IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-122944IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-124465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MDKKTGKGRQ KIEMKLIEDN KAHIVTLSKR KKGLYKKAKE YSTLTGADVG VVLITPSGKP  60
HFYSSTSIEK ITDKFLELKQ DDRQRDHDDV SKSNVFETFE DLRKEVQALN EKEKERILRY  120
KIMHPHSEVP SDKHRLEQLE AIKSRLDKIK NEKKGLCSSQ ANQV*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016541017.11e-114PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLA0A2G2YQP51e-115A0A2G2YQP5_CAPAN; Uncharacterized protein
STRINGXP_009779179.11e-52(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17801260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.13e-18AGAMOUS-like 29