PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA09g03690
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family AP2
Protein Properties Length: 411aa    MW: 44834.5 Da    PI: 5.03
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA09g03690genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP222.13.7e-071191532355
         AP2  23 se.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  + ++ + k+++lg f+ta  Aa+a+++a+ k++g
  CA09g03690 119 GWmGQdCGKQVYLGGFDTAHAAARAYDRAAIKFRG 153
                 44322345************************998 PP
2AP242.41.8e-13196246155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  CA09g03690 196 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIEAARAYDKAAIKCNG 246
                 89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103213.32786161IPR001471AP2/ERF domain
SMARTSM003804.4E-14107167IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-10124163IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.8E-11126162IPR001471AP2/ERF domain
PfamPF008474.2E-9196246IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-17196255IPR016177DNA-binding domain
CDDcd000185.74E-26196256No hitNo description
Gene3DG3DSA:3.30.730.109.5E-16197254IPR001471AP2/ERF domain
SMARTSM003801.7E-31197260IPR001471AP2/ERF domain
PROSITE profilePS5103215.514197254IPR001471AP2/ERF domain
PRINTSPR003673.9E-6198209IPR001471AP2/ERF domain
PRINTSPR003673.9E-6236256IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MFDLNVGLEE DVVETVNTFE KLNELSVGQI ENSGTSNSSI VNLESSSNAG DDEFISGSDH  60
HHHHRHPDEY AFDILTKEFF PLTGGETTAV AAPELEKKQQ WLDLSANYGG VPMEQRCPGW  120
MGQDCGKQVY LGGFDTAHAA ARAYDRAAIK FRGLDADINF NVSDYHDDLK QMANFSKEEF  180
VHILRRQSTG FARGSSKYRG VTLHKCGRWE ARMGQFLGKK YIYLGLFDSE IEAARAYDKA  240
AIKCNGREAV TNFEPSTYED ELSTEADNGG NHNLDLNLGI APSVLAGDQL GNTCQMGNYE  300
VQSASNGLPS YIGAMNSPST EMGSKLPHGN QLLTNRPLLW NGVNTSIFPT FKGTALGKGM  360
EIDSSPNWSP SVPLFSTAAS SGFANSTTAA AAHLPNFSNN MNFAHYYCRS *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1320020.0AF132002.1 Petunia x hybrida PHAP2B protein (Ap2B) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016542470.10.0PREDICTED: floral homeotic protein APETALA 2-like isoform X1
SwissprotB8AXC32e-85AP21_ORYSI; APETALA2-like protein 1
TrEMBLA0A2G2YQL60.0A0A2G2YQL6_CAPAN; Floral homeotic protein APETALA 2
STRINGPGSC0003DMT4000717320.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.22e-79AP2 family protein