PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA09g05400

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

GRAS

Protein Properties

Length: 748aa MW: 84652.1 Da PI: 5.219

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA09g05400	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	371.5	1.1e-113	374	745	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 l++lL++cA+av+++d + a +lL+ +++++sp gd +qRla++f+ +L+arla+++s++ykal ++ts ++ l+a++l+ sP+ k+s ++ N CA09g05400 374 LRTLLINCAQAVAADDSRVAYELLKLIRQHSSPFGDGNQRLAHCFADGLEARLAGTGSQIYKALVNKRTS---AADLLKAYHLYLASSPFRKISSFASN 469 6789**********************************************************999998...9********************* PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 ++I+ +e+++rvH+iDf+i +G+QWp+++q +a+R++gpp+lRiTg++ p++g +e++eetg+rLa++A++++vpfe+++ +ak++e++++e+L++ CA09g05400 470 KTIMIKAENATRVHVIDFGILYGFQWPTFIQRIAEREGGPPKLRITGIEFPQPGfrPAERIEETGRRLADYARSFNVPFEYHA-IAKKWETITVEDLKL 567 *************************************************9*************************.7********** PP GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295 +++E laVn+ ++ ++l+de+ +++s r+ vL+l+++++P+++v++ + ++s+ F++rf eal ++salfd+le+ +pre er +Ere++gre+ CA09g05400 568 DKDEFLAVNCLYRFKNLHDETIAVDSSRTIVLNLIRKINPDIFVHAIVNGAYSSPFFVTRFREALFHFSALFDMLETIVPREIPERGLIEREIFGREAL 666 *********************************************************************************************** PP GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplseka.akqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 nv+aceg er+er et+++W++r+ a F+++p++ ++ ++a +r ++ d + ++e+s++l+lgWk+r+++++S+W+ CA09g05400 667 NVIACEGWERVERPETYKQWQARILGARFTQIPFDREEfLNKAVEKVRLYHRD-FLIDEDSQWLLLGWKGRTIFALSCWK 745 ******************************8766156788889999955.***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	64.556	348	725	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.7E-111	374	745	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 748 aa Download sequence Send to blast
MDPSSLNSFQ LRDQSLPISS DQRMNNGPRF ELIYSDQNLL NDPRLENSFV QHKFGPVGFI 60 SGDHLPTNVE SRTDLGFEDG FSEDIDFSDA VLSYINRMLM EEDMEDKTDM LQESLELQAK 120 EKSFYEALGK KYPPSPEQNV FTDRNSYFTG SVYSSTSNTG DSSGYLADNI STEYNSSYIE 180 NLSNRDTSYS SVCSSNSGNT IVDGFLESPV SSFHILNIYD ESQSILNFQK GVEEASKFLP 240 TSYKLLNSVD INDLPPRDPK GEADFVDAQV KEKDEGETST TEARGKKNPL RGDNIIEEER 300 SSKQAAVFTE STLRSEEFDI VLLNSMGKGG EALEAYRQDL RNAKSKNTLQ MPKGSKGGKG 360 RGKKQGGTKE VIDLRTLLIN CAQAVAADDS RVAYELLKLI RQHSSPFGDG NQRLAHCFAD 420 GLEARLAGTG SQIYKALVNK RTSAADLLKA YHLYLASSPF RKISSFASNK TIMIKAENAT 480 RVHVIDFGIL YGFQWPTFIQ RIAEREGGPP KLRITGIEFP QPGFRPAERI EETGRRLADY 540 ARSFNVPFEY HAIAKKWETI TVEDLKLDKD EFLAVNCLYR FKNLHDETIA VDSSRTIVLN 600 LIRKINPDIF VHAIVNGAYS SPFFVTRFRE ALFHFSALFD MLETIVPREI PERGLIEREI 660 FGREALNVIA CEGWERVERP ETYKQWQARI LGARFTQIPF DREEFLNKAV EKVRLYHRDF 720 LIDEDSQWLL LGWKGRTIFA LSCWKPV*

Sequence ? help Back to Top

Protein Sequence Length: 748 aa Download sequence Send to blast

MDPSSLNSFQ LRDQSLPISS DQRMNNGPRF ELIYSDQNLL NDPRLENSFV QHKFGPVGFI  60
SGDHLPTNVE SRTDLGFEDG FSEDIDFSDA VLSYINRMLM EEDMEDKTDM LQESLELQAK  120
EKSFYEALGK KYPPSPEQNV FTDRNSYFTG SVYSSTSNTG DSSGYLADNI STEYNSSYIE  180
NLSNRDTSYS SVCSSNSGNT IVDGFLESPV SSFHILNIYD ESQSILNFQK GVEEASKFLP  240
TSYKLLNSVD INDLPPRDPK GEADFVDAQV KEKDEGETST TEARGKKNPL RGDNIIEEER  300
SSKQAAVFTE STLRSEEFDI VLLNSMGKGG EALEAYRQDL RNAKSKNTLQ MPKGSKGGKG  360
RGKKQGGTKE VIDLRTLLIN CAQAVAADDS RVAYELLKLI RQHSSPFGDG NQRLAHCFAD  420
GLEARLAGTG SQIYKALVNK RTSAADLLKA YHLYLASSPF RKISSFASNK TIMIKAENAT  480
RVHVIDFGIL YGFQWPTFIQ RIAEREGGPP KLRITGIEFP QPGFRPAERI EETGRRLADY  540
ARSFNVPFEY HAIAKKWETI TVEDLKLDKD EFLAVNCLYR FKNLHDETIA VDSSRTIVLN  600
LIRKINPDIF VHAIVNGAYS SPFFVTRFRE ALFHFSALFD MLETIVPREI PERGLIEREI  660
FGREALNVIA CEGWERVERP ETYKQWQARI LGARFTQIPF DREEFLNKAV EKVRLYHRDF  720
LIDEDSQWLL LGWKGRTIFA LSCWKPV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-47	380	746	25	380	Protein SCARECROW
5b3h_A	1e-47	380	746	24	379	Protein SCARECROW
5b3h_D	1e-47	380	746	24	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975448	0.0	HG975448.1 Solanum pennellii chromosome ch09, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016542413.1	0.0	PREDICTED: scarecrow-like protein 9
Swissprot	O80933	0.0	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	A0A2G2XVW4	0.0	A0A2G2XVW4_CAPAN; Scarecrow-like protein 9
STRING	PGSC0003DMT400022997	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	0.0	GRAS family protein