PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA09g08910

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

FAR1

Protein Properties

Length: 212aa MW: 23956.6 Da PI: 9.619

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA09g08910	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.9	6.2e-27	42	127	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +Y++YA+++GF +r+++ ++s rnge ++r++vC+keg++++++++ + +r+ r gCka++ vkke++gkw+v+kl++eHnH+l CA09g08910 42 YYSTYATHLGFIMRVDAFRRSMRNGELVWRRLVCNKEGFSKSRQSQ--SGKRKCRAIREGCKAMIIVKKEQSGKWVVAKLVKEHNHPL 127 8***************************************9988..888889999***************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.2E-25	42	128	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MVVESSSGKE LTTNGVLEAE GHLNMEPYVG MEFESEEAAK AYYSTYATHL GFIMRVDAFR 60 RSMRNGELVW RRLVCNKEGF SKSRQSQSGK RKCRAIREGC KAMIIVKKEQ SGKWVVAKLV 120 KEHNHPLIVK PVNTRKGAIL CQTPDDKDVK IRELAAELQK ERKRSAALQE QLDMVLIDME 180 DHSEQLSKNI SDIVKSVKEL ESRKTVFQNG G*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975448	1e-149	HG975448.1 Solanum pennellii chromosome ch09, complete genome.
GenBank	HG975521	1e-149	HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016541847.1	1e-156	PREDICTED: protein FAR1-RELATED SEQUENCE 12 isoform X2
TrEMBL	A0A1U8E3M3	1e-155	A0A1U8E3M3_CAPAN; protein FAR1-RELATED SEQUENCE 12 isoform X2
TrEMBL	A0A2G2YSW8	1e-155	A0A2G2YSW8_CAPAN; Uncharacterized protein (Fragment)
STRING	XP_009802876.1	1e-135	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12791	15	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	2e-79	FAR1 family protein