 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | CA09g10820 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
||||||||
| Family | FAR1 | ||||||||
| Protein Properties | Length: 102aa MW: 11693.2 Da PI: 10.0256 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 61.2 | 3.2e-19 | 33 | 100 | 1 | 69 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvk 69
++YneYA ++GFsvrk++ +ksk +g it+r+f+C+k+g+r ++k++ +++r+etrtgC a+l+v+
CA09g10820 33 NYYNEYAATIGFSVRKEYANKSKAHGYITSRKFTCYKKGYRGKDKRD-MLVKKPRKETRTGCLAHLVVS 100
69******************************************999.99****************997 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03101 | 1.3E-16 | 33 | 100 | IPR004330 | FAR1 DNA binding domain |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 102 aa Download sequence Send to blast |
MENASLNDHN NTSHSFKPIK LGMEFDSDED GFNYYNEYAA TIGFSVRKEY ANKSKAHGYI 60 TSRKFTCYKK GYRGKDKRDM LVKKPRKETR TGCLAHLVVS R* |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_016484692.1 | 1e-44 | PREDICTED: protein FAR1-RELATED SEQUENCE 12-like | ||||
| TrEMBL | A0A2G2YS00 | 2e-69 | A0A2G2YS00_CAPAN; Uncharacterized protein | ||||
| STRING | XP_009619707.1 | 1e-40 | (Nicotiana tomentosiformis) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA3021 | 17 | 40 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G59470.2 | 4e-15 | FAR1 family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|