PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA09g11270
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 178aa    MW: 20292.7 Da    PI: 9.176
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA09g11270genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.31.6e-124990351
         AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51
                 +GV++  k+ +W A I++      +k+++lg+ gt eeAa+++++a+ 
  CA09g11270 49 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGTQEEAARLYDRAAF 90
                79**98..47*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510328.54431103IPR001471AP2/ERF domain
PfamPF008471.3E-64891IPR001471AP2/ERF domain
SMARTSM003807.6E-548105IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-84993IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.3E-75195IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
KIAIKVVPGT SNSHASGSLM EQTAQQFPEV KRRKRHRRKH FENQEPCLMR GVYFKNMKWQ  60
AAIKVDKKQI HLGTVGTQEE AARLYDRAAF MCGREPNFEL SEEEKQELRQ FKWDDFLAFT  120
RSAITNKKTR RRSGAGARRK SEPLTSALNS EEEEEGGEPE SNGFSASEDI EHDVSFS*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2540664e-87AC254066.8 Solanum lycopersicum strain Heinz 1706 chromosome 9 clone sle-10p22 map 9, complete sequence.
GenBankHG9754484e-87HG975448.1 Solanum pennellii chromosome ch09, complete genome.
GenBankHG9755214e-87HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016542159.11e-129PREDICTED: ethylene-responsive transcription factor-like protein At4g13040
SwissprotQ56XP92e-46ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040
TrEMBLA0A1U8EE681e-128A0A1U8EE68_CAPAN; Ethylene-responsive transcription factor-like protein
TrEMBLA0A2G2YS971e-128A0A2G2YS97_CAPAN; ethylene-responsive transcription factor-like protein At4g13040
STRINGXP_009758059.12e-98(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA62462433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.12e-47ERF family protein