PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA09g11720
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 143aa    MW: 16405.9 Da    PI: 7.0937
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA09g11720genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS72.57.7e-233313383182
        GRAS  83 lfsevsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfe 177
                 +  ++ P+ kf+h+ aN+aI e v  + +++Hi+Dfd++qG+QW ++++a+ +R++    lR T +++ e++   ++ + eet++rL ++ + +g++++
  CA09g11720  33 IKGKINPFGKFAHFGANSAIIEVVPDDaQTIHIVDFDMGQGIQWTPIIKAMGQRRKA---LRFTSIKKTEEEstsDQWRFEETKKRLVDYTNLFGLRLQ 128
                 556789******************88879*************************776...9*****998877888999********************9 PP

        GRAS 178 fnvlv 182
                  + ++
  CA09g11720 129 VKEMT 133
                 98764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098519.1441142IPR005202Transcription factor GRAS
PfamPF035142.6E-2033133IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MDRQMSLHHL LAAYGEAMEN GHKELVEVII RSIKGKINPF GKFAHFGANS AIIEVVPDDA  60
QTIHIVDFDM GQGIQWTPII KAMGQRRKAL RFTSIKKTEE ESTSDQWRFE ETKKRLVDYT  120
NLFGLRLQVK EMTIEEFPSE LR*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016579488.12e-75PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBLA0A2G2YSJ81e-101A0A2G2YSJ8_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000685076e-65(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53611938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.12e-12GRAS family protein