PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA09g13840

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

DBB

Protein Properties

Length: 194aa MW: 21199.6 Da PI: 5.2465

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA09g13840	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	20.5	9.6e-07	4	45	5	40
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +C+ ++e++ + +C+++ +lC +C + H+ H+++ CA09g13840 4 ICEYCGEQRSIVYCRSDAACLCLSCDRNVHSAnalsqrHSRT 45 7*****************************657777777765 PP
2	zf-B_box	26.3	1.5e-08	46	89	4	40
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvv 40 +C++++++++ C + ++ lC++C ++H + H+++ CA09g13840 46 LICERCNSQPAVVRCIEERTSLCQNCDWSGHASsssgstmHKRQ 89 69*****************************7778888888875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	9.627	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	5.19E-7	4	47	No hit	No description
SMART	SM00336	4.4E-8	4	47	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	8.916	43	91	IPR000315	B-box-type zinc finger
CDD	cd00021	8.14E-4	47	73	No hit	No description
SMART	SM00336	2.8	48	91	IPR000315	B-box-type zinc finger

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MGYICEYCGE QRSIVYCRSD AACLCLSCDR NVHSANALSQ RHSRTLICER CNSQPAVVRC 60 IEERTSLCQN CDWSGHASSS SGSTMHKRQA LSSYTGCPSA AELSNIWSFL LDDPSVGDTC 120 EQRMGSMSIN DNRPRDGQDP QGKDNSQNVF AAVEVSEMNI SDKSNLLMES SMPTFDNKLH 180 NLEPPIGSSS KVI*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975451	0.0	HG975451.1 Solanum pennellii chromosome ch12, complete genome.
GenBank	HG975524	0.0	HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016554510.1	1e-138	PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
Refseq	XP_016554511.1	1e-138	PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
Refseq	XP_016554512.1	1e-138	PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
Refseq	XP_016554513.1	1e-138	PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
Refseq	XP_016554514.1	1e-138	PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
Swissprot	Q9SSE5	2e-61	COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBL	A0A1U8F757	1e-137	A0A1U8F757_CAPAN; zinc finger protein CONSTANS-LIKE 9-like
STRING	Solyc12g006240.1.1	1e-122	(Solanum lycopersicum)
STRING	PGSC0003DMT400074143	1e-121	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1270	24	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07650.4	4e-60	CONSTANS-like 9