PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA09g14220
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 175aa    MW: 19774.3 Da    PI: 7.5071
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA09g14220genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.42.2e-141663249
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                +ie     + +fskRr g+ KKA+EL   Cd++v +iifs+tgk y +
  CA09g14220 16 KIEKRDDLYASFSKRRSGLYKKASELVRECDVDVGMIIFSPTGKPYSF 63
                6777777789**********************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.18767IPR002100Transcription factor, MADS-box
SMARTSM004322.7E-19766IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.5E-22878IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-12929IPR002100Transcription factor, MADS-box
PfamPF003197.9E-201663IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-122944IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-124465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MENKKGKGRR KLPLKKIEKR DDLYASFSKR RSGLYKKASE LVRECDVDVG MIIFSPTGKP  60
YSFFHPTVDA IVSCFQNPDL QLSISAQLVA AHARHRVNEL NSRLEELDTI KKDAVFQKNM  120
YDEVMETGQK SRWESVEEPS AEELTKFEDW LNTVGSDLQN RLNQLESGAS SSSG*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016540670.11e-117PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLA0A2G2YU061e-127A0A2G2YU06_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000914286e-72(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.16e-21AGAMOUS-like 29