PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA09g14250
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 176aa    MW: 20311.2 Da    PI: 8.6912
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA09g14250genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF32.51.1e-101852438
                -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEE CS
      SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevavi 38
                e +  r+v+fskRr  + KKA+EL   Cd+++ v 
  CA09g14250 18 EKQEERYVSFSKRRSDLYKKASELVMECDVDIGVT 52
                67889**************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.4E-8766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.072767IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.19E-17880IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-7929IPR002100Transcription factor, MADS-box
PfamPF003196.6E-131863IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-72944IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-74465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MENKKGKGRQ KMPLRKKEKQ EERYVSFSKR RSDLYKKASE LVMECDVDIG VTFLFLTGNP  60
FAFFHPTVEA IVSRFQNLNL KLSESTQIVA AQARNRVKEL QSELDELDLR EDIAIANKNM  120
YDKVMETRQK GLWESIEQLN AEELTKFEAW LNVTRFNLQN RLNQLENGAS SSLGC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1416KGKGRQKMPLRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016540671.11e-125PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLA0A2G2YTZ41e-125A0A2G2YTZ4_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000914286e-77(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-19AGAMOUS-like 61