PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA09g14270
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 176aa    MW: 20044.7 Da    PI: 9.6418
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA09g14270genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.78.7e-151559145
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                k+ie +  r+vtfskRr g+ KKA+EL   Cd+++ ++ fs+tg+
  CA09g14270 15 KKIEKQDDRYVTFSKRRSGLYKKASELVKECDVDIGMMFFSPTGN 59
                689****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.586767IPR002100Transcription factor, MADS-box
SMARTSM004321.5E-19766IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-22878IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-13929IPR002100Transcription factor, MADS-box
PfamPF003191.1E-191663IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-132944IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-134465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MENKKGKGRQ KIPMKKIEKQ DDRYVTFSKR RSGLYKKASE LVKECDVDIG MMFFSPTGNP  60
FAFFHPTVDA VVSRFQNPDL KLSESTQLVA AQARNRVNGL QSGLDQLDLR EDIAIANKNV  120
YDKVLETTQK SKWESIEQLN AEELTKFEAW LNVTRFNLQN RLNQLENGAS SSFGY*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016540674.11e-127PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A2G2YTX61e-127A0A2G2YTX6_CAPAN; Agamous-like MADS-box protein AGL61
STRINGPGSC0003DMT4000914281e-82(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.16e-26AGAMOUS-like 61