PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA09g15590
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 95aa    MW: 10831.7 Da    PI: 10.5092
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA09g15590genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF24.43.8e-081663249
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                +ie +  r+ tfs Rr g+ KKA+ L    d+   +++ s+ +k y +
  CA09g15590 16 KIEKDVDRYSTFSERRSGLYKKASKLVRENDVYLGIVLSSPADKAYAF 63
                59999*******************998888888888887777777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.862767IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-7766IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.16E-16878IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-6929IPR002100Transcription factor, MADS-box
PfamPF003192.0E-111663IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-62944IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-64465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MEGKKTTGRR KISLVKIEKD VDRYSTFSER RSGLYKKASK LVRENDVYLG IVLSSPADKA  60
YAFVHPTHNL VIDRFMNLKI DLGEQILLKI HVIK*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016540648.12e-44PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A2G2YUR12e-61A0A2G2YUR1_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000878133e-33(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-18AGAMOUS-like 61