PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA09g16580
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GATA
Protein Properties Length: 258aa    MW: 27776.9 Da    PI: 10.6001
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA09g16580genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.32.4e-196699134
        GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                Cs C+ttkTplWR+gp g+k+LCnaCG+++rk +
  CA09g16580 66 CSDCNTTKTPLWRSGPKGPKSLCNACGIRQRKAR 99
                *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004017.7E-1760112IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.62E-126399No hitNo description
Gene3DG3DSA:3.30.50.108.6E-166499IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.5326496IPR000679Zinc finger, GATA-type
CDDcd002021.10E-126597No hitNo description
PfamPF003204.8E-176699IPR000679Zinc finger, GATA-type
PROSITE patternPS0034406691IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009735Biological Processresponse to cytokinin
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
VDNFGSRSSG SHDQLEKKNK GLKLTLWKNK GVQKLKNNNL DYTNSKLKLE DQNDYNNNNI  60
IPIRVCSDCN TTKTPLWRSG PKGPKSLCNA CGIRQRKARR AAAAAATATN GTNVNSTETS  120
STTTTITTTT KVKVQQQKNK TTKVNTNHVV PFKKRCKFLS TTTTAPAPAA TAXTAPAPAA  180
ATVTATAHCT LVGSSSSSSS YNNNNNNNNN TNQKQKLCFE DFFVNLSNNL AIHRVFPQDE  240
KEAAILLMAL SSGLVHG*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754515e-38HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016540407.11e-123PREDICTED: GATA transcription factor 21-like
TrEMBLA0A2G2YUT60.0A0A2G2YUT6_CAPAN; GATA transcription factor 16
STRINGSolyc12g008830.1.11e-91(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30972249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.13e-21GATA family protein