PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA09g16600
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 213aa    MW: 23417.4 Da    PI: 10.3519
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA09g16600genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.82.4e-13126170347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ +++ + ++lG+g+W+ I+r + ++Rt+ q+ s+ qky
       CA09g16600 126 PWTEDEHRKFLIGLEKLGKGDWRGISRNFVTTRTPTQVASHAQKY 170
                      7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.651119175IPR017930Myb domain
SuperFamilySSF466891.12E-17121176IPR009057Homeodomain-like
TIGRFAMsTIGR015574.9E-18122174IPR006447Myb domain, plants
SMARTSM007172.2E-9123173IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-11123169IPR009057Homeodomain-like
PfamPF002497.7E-11126170IPR001005SANT/Myb domain
CDDcd001671.45E-8126171No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MGRKCSHCGY IGHNSRTCST LKCSISGSNF IGGLKLFGVQ LDIANSSSSS SSSSSFSSHN  60
LKKSFSLDCL SLTNSHIGHS HLSSSLSPSP SINESCEKST TSINNNGYLS DGIGVGCVGE  120
RKKGAPWTED EHRKFLIGLE KLGKGDWRGI SRNFVTTRTP TQVASHAQKY FLRQSSINKK  180
KRRSSLFDMV NIHFFWILIQ LKLDRETSRK YT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178182KKKRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00565DAPTransfer from AT5G56840Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755241e-81HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016540404.11e-134PREDICTED: transcription factor MYB1R1
TrEMBLA0A1U8E9891e-133A0A1U8E989_CAPAN; Uncharacterized protein
TrEMBLA0A2G2YUY31e-133A0A2G2YUY3_CAPAN; transcription factor MYB1R1
STRINGPGSC0003DMT4000009025e-89(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33852147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.17e-50MYB_related family protein