PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA09g16770
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C3H
Protein Properties Length: 254aa    MW: 29616 Da    PI: 5.4133
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA09g16770genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.63.9e-07113133526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  C++f++ G C +Gd C FaHg
  CA09g16770 113 ACPDFRK-GNCTRGDGCEFAHG 133
                 7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.2966097IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-5107137IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-4108134IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.347109135IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-5112135IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-5113133IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MMIGERNRRH PTVDIPPWDD RTVNNKIQQF MEEEYSLFVH HDSDYDYYEE VDAFQDVEIP  60
VDVFACDNFR MYEFKVRRCT RGRSHDWTEC PYVHPGEKAR RRDPRKYHYS GTACPDFRKG  120
NCTRGDGCEF AHGVFECWLH PCRLNSMPSS FNVQMNSPVF GSPRRVMTRP GYFSLPATPS  180
GDLTRPGYRV FDTWEKGEYE EEPVMERVES GRDLRVKMFE KLSKENPLDP VDPNPNSNPG  240
PNPDVGWVSD LIQ*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016540386.11e-105PREDICTED: zinc finger CCCH domain-containing protein 20
SwissprotQ9M0G23e-57C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A2G2YV900.0A0A2G2YV90_CAPAN; Zinc finger CCCH domain-containing protein 49
STRINGBra024157.1-P2e-69(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18572158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.12e-59C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]