PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA09g17260
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 188aa    MW: 20877.8 Da    PI: 6.7492
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA09g17260genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.57.8e-191866355
         AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                y+GVr +k +g+Wv+eIr p++   r r++lg+++t+e+Aa+a +aa  +l+g
  CA09g17260 18 YRGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDTPEKAARAFDAALFCLRG 66
                9****999.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.03E-211675IPR016177DNA-binding domain
SMARTSM003808.0E-341780IPR001471AP2/ERF domain
PROSITE profilePS5103222.3521774IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-301776IPR001471AP2/ERF domain
CDDcd000186.03E-281876No hitNo description
PfamPF008471.4E-111866IPR001471AP2/ERF domain
PRINTSPR003673.4E-101829IPR001471AP2/ERF domain
PRINTSPR003673.4E-104056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MVKNGKNSSS SSSMSSMYRG VRKRKWGKWV SEIRLPNSRE RIWLGSYDTP EKAARAFDAA  60
LFCLRGSNAN FNFPNSPPEI VXXXXAEIQV AAARFANRAG PEEEGGENRA GLRENGMSDR  120
SSSDTEDMSL QSESPESEKT EMTSAWARLV NNDNLENWAR LRESPNFYPS SSSSDVFVRA  180
ESPCVXK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1518751573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00151DAPTransfer from AT1G19210Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016540315.11e-116PREDICTED: uncharacterized protein LOC107840889
SwissprotQ84QC27e-45ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A2G2YVE31e-127A0A2G2YVE3_CAPAN; Ethylene-responsive transcription factor
STRINGXP_009624342.17e-45(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19392466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.16e-34ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]