PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA09g18600
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family NAC
Protein Properties Length: 176aa    MW: 20571.4 Da    PI: 9.2371
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA09g18600genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM90.33.5e-28161521128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 
                 lp Gf+F Ptdeel   yLk k  g k++   +++++diyk+eP++L+  + k+ ++++y F+ +++k+ tg+r +r+t +g+Wka+   k++ ++   
  CA09g18600  16 LPIGFHFIPTDEELN-MYLKLKSCGGKIPH-GIFTDLDIYKHEPHELRgLAEKHWDDRMYLFTLSRRKNDTGTRLERKTPKGVWKASQARKNLSNNekf 112
                 699**********97.9**********999.89**************933333445578******************************9999997777 PP

         NAM  96 ..........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           ++ ++g+k++Lv++   ++k++kt+W+m eyr+
  CA09g18600 113 gnirnkdvtgDDVQIGTKTSLVYW---ESKTTKTSWLMSEYRF 152
                 77766666555555**********...566689********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.24E-2915159IPR003441NAC domain
PROSITE profilePS5100527.2316175IPR003441NAC domain
PfamPF023651.3E-1417151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MDSSNYEYDP EWKKKLPIGF HFIPTDEELN MYLKLKSCGG KIPHGIFTDL DIYKHEPHEL  60
RGLAEKHWDD RMYLFTLSRR KNDTGTRLER KTPKGVWKAS QARKNLSNNE KFGNIRNKDV  120
TGDDVQIGTK TSLVYWESKT TKTSWLMSEY RFPDELHHQP VSNEVPKLLI IMLSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-1671526140Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016540566.11e-119PREDICTED: NAC domain-containing protein 2-like
TrEMBLA0A1U8E2C11e-118A0A1U8E2C1_CAPAN; NAC domain-containing protein 2-like
STRINGPGSC0003DMT4000870805e-53(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1556777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.12e-20NAC family protein