PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA10g00260

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

bHLH

Protein Properties

Length: 228aa MW: 25321.4 Da PI: 9.51

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA10g00260	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.1	9.8e-06	144	182	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++ll ++ + + a++L +A+eYIk L CA10g00260 144 VRKEKMGDRITALQQLLTPL-----RATDTASVLSEAIEYIKFL 182 5778999**********9.....569************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.731	133	182	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.88E-4	143	186	No hit	No description
SuperFamily	SSF47459	6.15E-10	143	194	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.8E-8	143	191	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MPIASTSTTT TNYSSNWPTE ADHDHVDIKP RTFLDSVSVS RSSRSHDDGG GGGGGGSEDV 60 LSSHDPNFQI MSLAAMNDVQ SSLFSSNLHN PQLPNDTTTV DEKAKNIGEV KDINKIISKK 120 INNAETSNKR SRNETPSPSP VFKVRKEKMG DRITALQQLL TPLRATDTAS VLSEAIEYIK 180 FLHDQIGALS APYMKXIYNF FLFLIKYFLF YRTIINSRML KKKEIKI*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016545775.1	7e-75	PREDICTED: transcription factor bHLH123-like isoform X1
Swissprot	Q8GXT3	2e-29	BH123_ARATH; Transcription factor bHLH123
TrEMBL	A0A1U8EQZ2	2e-73	A0A1U8EQZ2_CAPAN; transcription factor bHLH123-like isoform X1
STRING	PGSC0003DMT400064399	1e-56	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA860	24	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	9e-27	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]