PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA10g01490

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

HD-ZIP

Protein Properties

Length: 180aa MW: 21119.9 Da PI: 8.1871

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA10g01490	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.2	2.8e-18	21	74	4	57
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 + ++t+eq+++Le F +++++ e++ +LAk+lg++ rq+ +W+qNrRa++k+ CA10g01490 21 KKRLTQEQVKRLEISFDSTKKLEPEQKLQLAKELGVPPRQIAIWYQNRRARWKN 74 5679************************************************95 PP
2	HD-ZIP_I/II	105.7	3.5e-34	20	111	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +k+rl++eqvk LE sF++++kLepe+K +la+eLg+ prq+a+W+qnrRAR+k++ lE dy+aL+ ++d+ +e++++eke+e L+ elk+ CA10g01490 20 NKKRLTQEQVKRLEISFDSTKKLEPEQKLQLAKELGVPPRQIAIWYQNRRARWKNQSLELDYNALQLKLDTTLAEKKQIEKENELLKVELKK 111 79*************************************************************************************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.548	15	75	IPR001356	Homeobox domain
SMART	SM00389	6.9E-15	18	79	IPR001356	Homeobox domain
CDD	cd00086	1.21E-13	21	76	No hit	No description
Pfam	PF00046	1.0E-15	21	74	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	9.0E-20	21	82	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.18E-17	21	84	IPR009057	Homeodomain-like
PRINTS	PR00031	3.1E-5	46	55	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	50	73	IPR017970	Homeobox, conserved site
PRINTS	PR00031	3.1E-5	55	71	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MNNFLNSQYL HKHQSILNHN KKRLTQEQVK RLEISFDSTK KLEPEQKLQL AKELGVPPRQ 60 IAIWYQNRRA RWKNQSLELD YNALQLKLDT TLAEKKQIEK ENELLKVELK KVNEMLIAIK 120 QAQIQNELTQ GSSSFQEDVS CSWVNINNNN INNNNYNGSE SNLPLDEFYA CMKDMYDVY*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC254710	2e-70	AC254710.5 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-57k18 map 10, complete sequence.
GenBank	HG975449	2e-70	HG975449.1 Solanum pennellii chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016544740.1	1e-126	PREDICTED: homeobox-leucine zipper protein HAT7-like
TrEMBL	A0A2G2YIM8	1e-127	A0A2G2YIM8_CAPAN; Homeobox-leucine zipper protein HOX6
STRING	PGSC0003DMT400054818	1e-87	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2715	24	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	3e-25	HD-ZIP family protein