PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA10g01520
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family HB-other
Protein Properties Length: 522aa    MW: 57098.5 Da    PI: 4.5581
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA10g01520genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox16.12e-0521582855
                HHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
    Homeobox 28 eereeLAkkl..........gLterqVkvWFqNrRake 55
                +    LA+k            ++ +qV +WFqNrR+  
  CA10g01520 21 QVLDNLAEKFsssaersgkfVVQAKQVWNWFQNRRYAI 58
                555555555555555555557889***********865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.151161IPR001356Homeobox domain
SuperFamilySSF466891.2E-7463IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.0E-51664IPR009057Homeodomain-like
PfamPF167195.8E-41145272IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MEVTEMEAIL QAHNVQMPAK QVLDNLAEKF SSSAERSGKF VVQAKQVWNW FQNRRYAIRA  60
KQTKSPGRFI APPAFQSDPA VVKAPVKLSA SPMPQSDPAA VRIMPQAAQP VPSPQVRTMP  120
QAPQPLPAPS VPVQNVGRSV SDNTQMEFEA KSARDGAWYD VANFLSHRSV ESGEPEVLVR  180
FAGFGAEEDE WVNVRKHVRQ RSLPCEASEC VAVLPTDLIL CFQEGKDQAL YYDAHVLDAQ  240
RRRHDVRGCR CRFLVRYDHD QSEEIVPLRK VCRRPETDFR LQQLNTESLK QQKLGNDPTA  300
KVYPPADTPQ KAQTESRMKQ AEPTQKQPAP ENTIKTEPDV APTLQKPSTD SLTGNTLSET  360
APELMEETTE RPVAEIAEAP REVKNEMHLA EVAKQAPAEA PEQPPAETTL KPPATSTSKP  420
DEAQEQPPAD TTPEPPASST SNPDEAPKEP PAETTSSEEP PADSTSKPAE ASVEPPAETT  480
IEPPVDSTSM PVEASEEQTK TEEHTDAGAA TASTDQDDAP V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A7e-481432761134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B7e-481432761134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A7e-481432761134SHH1 SAWADEE
4iur_B7e-481432761134SHH1 SAWADEE
4iut_A7e-481432761134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B7e-481432761134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A7e-481432761134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B7e-481432761134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A7e-481432761134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B7e-481432761134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016545141.10.0PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2
SwissprotQ8RWJ71e-127SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A2G2YIQ20.0A0A2G2YIQ2_CAPAN; Uncharacterized protein
STRINGSolyc10g007130.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA88032124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-112sequence-specific DNA binding transcription factors;sequence-specific DNA binding