PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA10g02830

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

M-type_MADS

Protein Properties

Length: 217aa MW: 25309.4 Da PI: 9.9754

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA10g02830	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	29.7	8e-10	21	51	14	43
HHHH.HHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 14 skRr.ngilKKAeELSvLCdaevaviifsst 43 +R+ + ++KK eE S+LC++++ +iifs++ CA10g02830 21 LNRKtKSLFKKVEEFSILCGVDAVIIIFSPE 51 5666369**********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	12.18	1	49	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.88E-13	1	82	IPR002100	Transcription factor, MADS-box
SMART	SM00432	3.6E-5	1	60	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	7.8E-10	17	51	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MARKRLGLTR NRRENVRDSI LNRKTKSLFK KVEEFSILCG VDAVIIIFSP EENQPIVWKS 60 TNQAKELLMR YFSFPTFERI KKLVIHEMYL SKKVDEMKEK VDKIEKMNEE KEIKLLFRQL 120 VEGKNITEFD SRNIKGLLKL FPTTMDKIKE RKEQFILQQQ PSQPPNSPSN FKLAEENVTQ 180 SPCPMKDLIN DQWFVETMSS NQYYFGLGGG SCTKSA*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016544711.1	1e-158	PREDICTED: agamous-like MADS-box protein AGL86
TrEMBL	A0A1U8EE90	1e-157	A0A1U8EE90_CAPAN; Uncharacterized protein
TrEMBL	A0A2G2YJ25	1e-157	A0A2G2YJ25_CAPAN; agamous-like MADS-box protein AGL86
STRING	XP_009794692.1	5e-72	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA378	20	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G05860.2	1e-16	M-type_MADS family protein