PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA10g04740

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

G2-like

Protein Properties

Length: 133aa MW: 15114.2 Da PI: 10.3479

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA10g04740	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	93.2	2.1e-29	61	110	2	51
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 +rlrWtp+LH+rFv+ave+LGG+++AtPk +l+lm++kgL ++hvkSHLQ CA10g04740 61 ARLRWTPDLHRRFVHAVERLGGHDRATPKLVLRLMDIKGLNIAHVKSHLQ 110 79************************************************ PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.5E-27	57	110	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.333	57	117	IPR017930	Myb domain
SuperFamily	SSF46689	2.15E-13	60	111	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.5E-20	61	111	IPR006447	Myb domain, plants
Pfam	PF00249	2.3E-7	62	112	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 133 aa Download sequence Send to blast
MEDSGGTEFS KTSPNSDKYV DEDENTWIKL QKDGGSSSNS TVEESREKKI SVRSYVRSKM 60 ARLRWTPDLH RRFVHAVERL GGHDRATPKL VLRLMDIKGL NIAHVKSHLQ VNLSLATTKT 120 KYLKYFVIHI NS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-18	61	110	3	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-18	61	110	3	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	3e-18	61	110	2	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-18	61	110	2	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-18	61	110	2	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-18	61	110	2	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-18	61	110	3	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-18	61	110	3	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-18	61	110	3	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-18	61	110	3	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-18	61	110	3	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-18	61	110	3	52	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC240197	2e-70	AC240197.3 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-208l2 map 10, complete sequence.
GenBank	HG975522	2e-70	HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016552953.1	1e-75	PREDICTED: putative Myb family transcription factor At1g14600
TrEMBL	A0A2G2VSP1	1e-82	A0A2G2VSP1_CAPBA; Putative Myb family transcription factor
STRING	PGSC0003DMT400041071	3e-50	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4382	21	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	6e-34	G2-like family protein