PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA10g08330

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Protein Properties

Length: 833aa MW: 92237.1 Da PI: 7.7958

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA10g08330	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	58	1.7e-18	248	348	1	99
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+kvl+ sd+++ grlvlpk +ae++ ++++e+ l+++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e++l+++ CA10g08330 248 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD-PEGKLLMG 344 99************************555567778***********99899999999.*******************876.88888888 PP EE-S CS B3 96 vfrk 99 ++++ CA10g08330 345 FRKA 348 8765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.0E-29	240	349	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.22E-19	245	347	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.66E-22	246	347	No hit	No description
SMART	SM01019	1.9E-20	248	349	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.0E-16	248	348	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.152	248	349	IPR003340	B3 DNA binding domain
PROSITE profile	PS51050	14.202	509	559	IPR011124	Zinc finger, CW-type
Pfam	PF07496	6.3E-12	514	556	IPR011124	Zinc finger, CW-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 833 aa Download sequence Send to blast
MQPYPAFLQE AASWSRDSNF TRYAKTPNHE KPKAFGASIS NSVGETASTS LGSQMNGSEP 60 NKREGSDSID PALLLPHQNE NTNRPVGQIK MEEAFHPAGE SGSTFSSNLC QAAAESSKNA 120 KLDSYIGYKG VTNIHGSMVQ TNLSIALSSP SPNTRFFPTT LDDGDLNKTI SSLQQGSRSR 180 NLLPKPPKST SALGPETNAG IISHIRVARP PVEGRIKNQL LPRYWPRITD QELQQISGDS 240 NSTIIPLFEK VLSASDAGRI GRLVLPKACA EAYFPPISQP EGLPLRIQDV KGKEWVFQFR 300 FWPNNNSRMY VLEGVTPCIQ SMQLQAGDTV TFSRMDPEGK LLMGFRKASI VNSTQENRPS 360 TIPKSVFSTE STSFSAMPEN IPLMSGYSGL FQSFKGSRES SLNLSSKHFN SSDFGWYLTE 420 KNGGRNADSP SMPVSERKRS RNIGSKSKRL LIDAHDALEL KVSWEELQDM LRPPLSGQPT 480 TVTIEDHEFE EYEQPPVLGK RSIFTVRLSG EQEQWAQCDN CFKWRKLPAD YLLPPQWTCQ 540 DNISDHSRSS CSVPDDLTPR ELENLLKMNK DLNKRRSAAS QRTTQAHDSS DLDSQANGIG 600 IAGDVREPGA TSVATTTKHP RHRPGCSCIV CIQPPSGKGK HNPSCTCNVC MTVKRRFKTL 660 MMRKKKRQSE REAELGQRNQ LMWSSKEETE VDSFSRQVKP EFDPSDKERS GSETLARGHS 720 SNQLPKLPEI SKSQLDLNCH PNREDTGSSH VSMMSLLQQA CLPLETYLRQ NGLTSLVSEQ 780 QGSSGSQGLP QDTRESDLRV HEDQCVVSTA QEQEKDVTKE NSEPVQSGKD HS*

Sequence ? help Back to Top

Protein Sequence Length: 833 aa Download sequence Send to blast

MQPYPAFLQE AASWSRDSNF TRYAKTPNHE KPKAFGASIS NSVGETASTS LGSQMNGSEP  60
NKREGSDSID PALLLPHQNE NTNRPVGQIK MEEAFHPAGE SGSTFSSNLC QAAAESSKNA  120
KLDSYIGYKG VTNIHGSMVQ TNLSIALSSP SPNTRFFPTT LDDGDLNKTI SSLQQGSRSR  180
NLLPKPPKST SALGPETNAG IISHIRVARP PVEGRIKNQL LPRYWPRITD QELQQISGDS  240
NSTIIPLFEK VLSASDAGRI GRLVLPKACA EAYFPPISQP EGLPLRIQDV KGKEWVFQFR  300
FWPNNNSRMY VLEGVTPCIQ SMQLQAGDTV TFSRMDPEGK LLMGFRKASI VNSTQENRPS  360
TIPKSVFSTE STSFSAMPEN IPLMSGYSGL FQSFKGSRES SLNLSSKHFN SSDFGWYLTE  420
KNGGRNADSP SMPVSERKRS RNIGSKSKRL LIDAHDALEL KVSWEELQDM LRPPLSGQPT  480
TVTIEDHEFE EYEQPPVLGK RSIFTVRLSG EQEQWAQCDN CFKWRKLPAD YLLPPQWTCQ  540
DNISDHSRSS CSVPDDLTPR ELENLLKMNK DLNKRRSAAS QRTTQAHDSS DLDSQANGIG  600
IAGDVREPGA TSVATTTKHP RHRPGCSCIV CIQPPSGKGK HNPSCTCNVC MTVKRRFKTL  660
MMRKKKRQSE REAELGQRNQ LMWSSKEETE VDSFSRQVKP EFDPSDKERS GSETLARGHS  720
SNQLPKLPEI SKSQLDLNCH PNREDTGSSH VSMMSLLQQA CLPLETYLRQ NGLTSLVSEQ  780
QGSSGSQGLP QDTRESDLRV HEDQCVVSTA QEQEKDVTKE NSEPVQSGKD HS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9a_A	3e-68	226	349	2	125	B3 domain-containing transcription repressor VAL1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	653	664	KRRFKTLMMRKK
2	653	666	KRRFKTLMMRKKKR

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC254745	0.0	AC254745.4 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-30h11 map 10, complete sequence.
GenBank	HG975522	0.0	HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016545902.1	0.0	PREDICTED: B3 domain-containing transcription repressor VAL2-like isoform X1
Swissprot	Q6Z3U3	0.0	Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBL	A0A2G2YL69	0.0	A0A2G2YL69_CAPAN; Uncharacterized protein
STRING	XP_009589564.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1491	23	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	0.0	HSI2-like 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]