PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA10g09180
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GATA
Protein Properties Length: 172aa    MW: 18981.6 Da    PI: 8.7451
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA10g09180genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA38.31.9e-12114148133
        GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33 
                 C++Cg ++   p+ R+gp g+++LCnaCGl+++ k
  CA10g09180 114 CRHCGFSSksNPMIRHGPAGPRSLCNACGLMWANK 148
                 *****988889*********************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062032.1E-73866IPR010402CCT domain
SMARTSM004010.0038108161IPR000679Zinc finger, GATA-type
CDDcd002021.39E-8113148No hitNo description
Gene3DG3DSA:3.30.50.107.8E-10113148IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.19E-6113148No hitNo description
PfamPF003204.9E-11114148IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
VQAVLLLLGG YEVPTVKMAS QSHSASIGGP GRLNQPQRAG SLSHFREKRK ERCFDKKIRY  60
TVQKEVTLRQ YNFGHFIFSK SESDEAASSL AEGNVGSSQE EQETSSYLLF ANKCRHCGFS  120
SKSNPMIRHG PAGPRSLCNA CGLMWANKFI IGFEALLTLL FPFVSLDSDD W*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ2612273e-72GQ261227.1 Solanum lycopersicum cultivar Rio Grande PtoR Hop-interacting protein THI008 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015088797.11e-71GATA transcription factor 24-like
SwissprotQ8H1G06e-43GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A0V0HSS31e-71A0A0V0HSS3_SOLCH; Putative GATA transcription factor 24-like
STRINGSolyc10g047640.1.15e-71(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26722348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.29e-40ZIM-like 1