PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA10g11320

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

FAR1

Protein Properties

Length: 245aa MW: 28357.3 Da PI: 8.7942

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA10g11320	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	81.6	1.4e-25	37	125	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++YneYA ++GFsvrk++ +ksk +g it+r+f+C+ke +r ++k++ +++r+et tgC a+++v+++ ++k+ v+ +e++HnH+l+ CA10g11320 37 NYYNEYAANIGFSVRKEYVNKSKAHGYITSRRFTCYKESYRGKDKRD-GMVKKPRKETGTGCLAHMVVSRQPNEKFLVILFEEKHNHPLV 125 69****************************************999.999***********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.9E-23	37	125	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MVDSMKTVSL NGHNDTSHSC EPIKLGMKFD SDEDGFNYYN EYAANIGFSV RKEYVNKSKA 60 HGYITSRRFT CYKESYRGKD KRDGMVKKPR KETGTGCLAH MVVSRQPNEK FLVILFEEKH 120 NHPLVYPSLA HMLPSQRTVK LSQVNEIDLL DDLGICPKSS FNYVARQAEE KSILGFTQRD 180 HKNYLRDKRK ESLRFEVAHS LVNYFEEIVI KDPSFQFSLQ LDSDGLITNV FWADVKMIRN 240 FQIY*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016484692.1	1e-97	PREDICTED: protein FAR1-RELATED SEQUENCE 12-like
TrEMBL	A0A2G2YLD2	1e-149	A0A2G2YLD2_CAPAN; Uncharacterized protein
STRING	XP_009619707.1	8e-94	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3021	17	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-37	FAR1-related sequence 5