PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA10g11650
Common Namea
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 218aa    MW: 25202.6 Da    PI: 9.0029
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA10g11650genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.91.3e-142267148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg +  +E +l+++++k+lG++ W++Ia +++ gRt++++k++w+++l
       CA10g11650 22 RGDFGWDEIDLILRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNSHL 67
                     6788899***************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512947.16116IPR017930Myb domain
SuperFamilySSF466891.96E-18272IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.3E-8227IPR009057Homeodomain-like
PROSITE profilePS5129422.241771IPR017930Myb domain
SMARTSM007171.9E-132169IPR001005SANT/Myb domain
PfamPF002491.9E-132267IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-182871IPR009057Homeodomain-like
CDDcd001675.80E-92867No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
LNRCRKSCRL RWLNYLRPHI KRGDFGWDEI DLILRLHKLL GNRWSLIAGR LPGRTANDVK  60
NYWNSHLQKK LITAPHRQER KYNTALKITT KNVLRPRPRT FSSSAKNNIS WCTNKSTVIT  120
NTLDKDERDK EIGLNICQKL TSETSSTIDD GVQWWTSLLE NCKEIEEDVA AVGIFEEKNK  180
LVPSLLHDEI NSLTMQQGQS DGWDDFSADI DLWNLLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-1627339110B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ6089920.0AJ608992.1 Capsicum annuum mRNA for R2R3 MYB transcription factor (a gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001311547.11e-158transcription factor MYB113-like
SwissprotQ9FNV91e-40MY113_ARATH; Transcription factor MYB113
TrEMBLA0A2G2YLG41e-157A0A2G2YLG4_CAPAN; Uncharacterized protein (Fragment)
STRINGSolyc10g086290.1.11e-94(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.16e-43myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]