PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA10g11660
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 88aa    MW: 10044 Da    PI: 11.6612
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA10g11660genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.72.6e-089322347
                     -HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47
                     +W++Ia +++ gRt +++k +w+++
       CA10g11660  9 RWSLIAGRLP-GRTTNDVKKYWNTH 32
                     6*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.272137IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-11440IPR009057Homeodomain-like
PfamPF002492.1E-6732IPR001005SANT/Myb domain
CDDcd001671.03E-5833No hitNo description
SuperFamilySSF466893.2E-7838IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MLFYGSLIRW SLIAGRLPGR TTNDVKKYWN THFQKKLNTT IALHPPRQKI NNKGKAIIKN  60
EIIKTLPWNL SNTKKMLLIG TTITKVL*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015089542.11e-18transcription factor MYB113-like isoform X1
TrEMBLA0A2G2YLH94e-55A0A2G2YLH9_CAPAN; Uncharacterized protein
STRINGSolyc10g086250.1.19e-18(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.11e-12myb domain protein 113