PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA10g11690
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 187aa    MW: 21448.4 Da    PI: 8.9116
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA10g11690genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding262.1e-082264146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     rg + ++E +l+++++k+lG++    I++  g  Rt++++k++w++
       CA10g11690 22 RGDFDPDEVDLILRLHKLLGNR-QFYIMKLPG--RTANDVKNFWNT 64
                     78999*****************.777887765..**********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512947.16116IPR017930Myb domain
SuperFamilySSF466894.82E-12272IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-9227IPR009057Homeodomain-like
PROSITE profilePS5129416.1291770IPR017930Myb domain
SMARTSM007174.8E-42168IPR001005SANT/Myb domain
PfamPF002491.7E-62264IPR001005SANT/Myb domain
CDDcd001672.57E-52566No hitNo description
Gene3DG3DSA:1.10.10.601.5E-102869IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
LNRCRKSCRL RWLNYLRPHI KRGDFDPDEV DLILRLHKLL GNRQFYIMKL PGRTANDVKN  60
FWNTRLLRKV NIAPINNKIG DNINTKNEII RPQPRNFSST MKNVSWCNNK SIINEANILE  120
NCNEIEEAIA TGTRTPLCKN ISSEKNCNEI DKTPCFLNGG GNATQQGQSD GGWDEFSMDD  180
IWNLLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-1337140109B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU3103994e-38EU310399.1 Solanum tuberosum chlorogenate inducer (Cai1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016555303.11e-124PREDICTED: transcription factor MYB113-like
SwissprotQ9FNV97e-31MY113_ARATH; Transcription factor MYB113
TrEMBLA0A2G2YLG51e-125A0A2G2YLG5_CAPAN; Transcription factor
STRINGSolyc10g086250.1.11e-51(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.13e-33myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]