PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA10g11710
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 189aa    MW: 21796.9 Da    PI: 9.8671
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA10g11710genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.31.5e-122676148
                     TSSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqkyl 48
                     r  + ++E +l+++++k+lG++     W++Ia +++ gRt+ ++k++w+++l
       CA10g11710 26 RSDFDPDEVDLILRLHKLLGNRqvyfLWSLIAGRLP-GRTASDVKNYWNTHL 76
                     567899******************************.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.391120IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.8E-9631IPR009057Homeodomain-like
SuperFamilySSF466892.38E-16682IPR009057Homeodomain-like
PROSITE profilePS5129419.0362180IPR017930Myb domain
SMARTSM007175.8E-92578IPR001005SANT/Myb domain
PfamPF002492.5E-112776IPR001005SANT/Myb domain
CDDcd001674.29E-92976No hitNo description
Gene3DG3DSA:1.10.10.601.5E-153280IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MCTGLNRCRK SCRLRWLNYL RPHIKRSDFD PDEVDLILRL HKLLGNRQVY FLWSLIAGRL  60
PGRTASDVKN YWNTHLLRKL NATKSNNKYC RANNIITRNE IIRPQPQNFS SAMKNVSWCN  120
NKSITKSTVD KDETDKEIVV NICEKPTVET TSSMDQGIQW WTSLLENCNE IYKTQSLLNG  180
GGNSFQQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-1468139109B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016544713.11e-125PREDICTED: transcription factor MYB113-like
SwissprotQ9FNV93e-37MY113_ARATH; Transcription factor MYB113
TrEMBLA0A2G2YLK71e-137A0A2G2YLK7_CAPAN; Transcription factor MYB1
STRINGSolyc10g086250.1.12e-72(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.11e-39myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]