PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA10g12810

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

G2-like

Protein Properties

Length: 418aa MW: 47094.7 Da PI: 7.8931

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA10g12810	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.4	1.6e-33	44	98	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerF+eav+qLGG++kAtPk++l+lm+++gLtl+h+kSHLQkYRl CA10g12810 44 KPRLKWTPDLHERFIEAVNQLGGADKATPKSVLKLMGIQGLTLYHLKSHLQKYRL 98 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.38	41	101	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.2E-31	42	99	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.14E-17	43	99	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.1E-24	44	99	IPR006447	Myb domain, plants
Pfam	PF00249	2.5E-10	46	97	IPR001005	SANT/Myb domain
Pfam	PF14379	1.1E-24	145	192	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence Send to blast
MYHHHHQDNS MHPSTRMSIP ERHLFLQGGN GNGDSGLVLS TDAKPRLKWT PDLHERFIEA 60 VNQLGGADKA TPKSVLKLMG IQGLTLYHLK SHLQKYRLSK NLHGQANASG ANKAGKKSNR 120 VERISENSAA CISNPSMGPQ PNKNIQISEA IQMQIEVQRR LHEQLEVQRH LQLRIEAQGK 180 YLQSVLEKAQ ETLGRQNMET VGLEAVKVQL SEFVSKASNQ CLNSAFPDIK ELSGFHSQQT 240 QATQPTDRSI DSCLTSRDGS LRDNAMHDNP IGLRPFDFTP SMECKDIAND TRIQQTELRW 300 CDNLKENRRL FSPVNEGREK AFTRETNCNN LSISIGLQDE KLNGSMNYSD GNFSGTERDV 360 KFFHQVAKRS ESVPERQKSS QEYKLSYFEP KLDLNMHDET DAASSCKQFD LNGFSWG*

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence Send to blast

MYHHHHQDNS MHPSTRMSIP ERHLFLQGGN GNGDSGLVLS TDAKPRLKWT PDLHERFIEA  60
VNQLGGADKA TPKSVLKLMG IQGLTLYHLK SHLQKYRLSK NLHGQANASG ANKAGKKSNR  120
VERISENSAA CISNPSMGPQ PNKNIQISEA IQMQIEVQRR LHEQLEVQRH LQLRIEAQGK  180
YLQSVLEKAQ ETLGRQNMET VGLEAVKVQL SEFVSKASNQ CLNSAFPDIK ELSGFHSQQT  240
QATQPTDRSI DSCLTSRDGS LRDNAMHDNP IGLRPFDFTP SMECKDIAND TRIQQTELRW  300
CDNLKENRRL FSPVNEGREK AFTRETNCNN LSISIGLQDE KLNGSMNYSD GNFSGTERDV  360
KFFHQVAKRS ESVPERQKSS QEYKLSYFEP KLDLNMHDET DAASSCKQFD LNGFSWG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-22	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-22	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	3e-22	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-22	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-22	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-22	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-22	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-22	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-22	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-22	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-22	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-22	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act on the GAL1 promoter (PubMed:12008900). Acts redundantly with MYR2 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:12008900}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC244920	0.0	AC244920.2 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-6e17 map 10, complete sequence.
GenBank	HG975522	0.0	HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016543173.1	0.0	PREDICTED: uncharacterized protein LOC107843408 isoform X2
Swissprot	Q9FK47	1e-132	PHLA_ARATH; Myb-related protein 1
TrEMBL	A0A1U8E7I8	0.0	A0A1U8E7I8_CAPAN; uncharacterized protein LOC107843408 isoform X2
STRING	PGSC0003DMT400021653	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2946	24	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18240.4	1e-130	myb-related protein 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]