PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA10g14880

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

FAR1

Protein Properties

Length: 215aa MW: 24721 Da PI: 9.9732

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA10g14880	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	72.1	1.3e-22	31	118	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +YneYA+++GFsvrk++ +k++ +g +t+ +f+C+keg+r+ +k++ + +++r+etrtgC a++ +++++g++++t++e +H+ +l+ CA10g14880 31 CYNEYATSIGFSVRKEYANKNRVQGYVTSTKFTCYKEGYRNIDKRD-SMVKKHRKETRTGCLAHIITSRRSNGVFRITSFEDKHSYPLV 118 7****************************************999.99999*******************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.0E-20	31	118	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MDPTSTKPQG ECNVSIKLGM KFDSDEHAYE CYNEYATSIG FSVRKEYANK NRVQGYVTST 60 KFTCYKEGYR NIDKRDSMVK KHRKETRTGC LAHIITSRRS NGVFRITSFE DKHSYPLVDP 120 TLSHLLPSQR NIKVVQAYEL DLLDDSGIRP KASFEYAARQ AGGQFFLGYT KGDHKNYLRD 180 KRQESLKRGV GRSLVNYFEK KNTRRSCFSI FFAV*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018631664.1	1e-108	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2G2YMG2	1e-140	A0A2G2YMG2_CAPAN; Uncharacterized protein
STRING	XP_009619707.1	2e-98	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3021	17	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-26	FAR1-related sequence 5