PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA10g16370
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family Trihelix
Protein Properties Length: 416aa    MW: 47973.7 Da    PI: 7.8713
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA10g16370genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix90.32.1e-28116201187
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                 rW++qe+l+L+e+r++++ +++++++k+plW+evs+ m +e g++rs k+C+ek+enl k+ykk+k+g+ +r  ++ ++++yf+qlea
  CA10g16370 116 RWPRQETLTLLEVRSQLDCKFKEANQKGPLWDEVSRIMsEEYGYQRSGKKCREKFENLYKYYKKTKDGKAGR--QDGKHYRYFRQLEA 201
                 8*************************************8889****************************98..55667*******85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.8E-20115202No hitNo description
CDDcd122035.89E-19116181No hitNo description
PROSITE profilePS500906.748116174IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MEDHHYGMMD LTQYMNGRSL FASVQPHLTP DLLCGQHQHF ENMVMASSAM APQHDNCLPH  60
QHHHHHEFHP DSSTGAAATT RTSVSVGGGG VCALSALEME GVGGGGVHGG DGGNVRWPRQ  120
ETLTLLEVRS QLDCKFKEAN QKGPLWDEVS RIMSEEYGYQ RSGKKCREKF ENLYKYYKKT  180
KDGKAGRQDG KHYRYFRQLE ALYGKTGSTI DISTFLHYNQ EAHQGPKLSD SLYDSSDSDA  240
TNLSDDENDS REKRKNKKRG KRSWKAKIRD FMDIQMRKLV EKQEFLLEKM MKTIEDKEKE  300
RILRQEEWRK QEAIRVEKQQ KFWANERAWI EARDAALIDA LHKLNGEEIM KSTITNYNLN  360
DKNASMFYCN KKQKDMNSLS SSCYYNFQIK NEGRSYCETS RHVPNVHETM DDGLF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1253261RKNKKRGKR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016543475.10.0PREDICTED: trihelix transcription factor PTL-like
SwissprotQ9LZS03e-87PTL_ARATH; Trihelix transcription factor PTL
TrEMBLA0A1U8EJG70.0A0A1U8EJG7_CAPAN; Trihelix transcription factor PTL
TrEMBLA0A2G2YMU90.0A0A2G2YMU9_CAPAN; trihelix transcription factor PTL-like
STRINGPGSC0003DMT4000724041e-172(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30632451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.11e-79Trihelix family protein
Publications ? help Back to Top
  1. Quon T,Lampugnani ER,Smyth DR
    PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana.
    Front Plant Sci, 2017. 8: p. 152
    [PMID:28228771]