PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA10g16430
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRF
Protein Properties Length: 382aa    MW: 42033.6 Da    PI: 9.5765
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA10g16430genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC80.51.5e-25152195144
         WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                 d+epgrCrRtDGKkWRCsr+v+ g+k+CErH+hrgrsrsrk++e
  CA10g16430 152 DPEPGRCRRTDGKKWRCSRDVVVGQKYCERHVHRGRSRSRKPVE 195
                 79***************************************987 PP
2QLQ40.67.8e-1579113236
         QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 
                 +F+ aQ+q+L+ Q l++++++a++ vPpeLl  ++
  CA10g16430  79 YFSLAQWQELELQTLIFRHFIAGVSVPPELLHLVK 113
                 7*****************************98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.4E-678114IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166617.10479114IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088808.8E-1079112IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.325152196IPR014977WRC domain
PfamPF088792.0E-21153195IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MDFNLKQQDD ESLTTTHHHH PAKLPKLVRD FQSVVSASTD SALPLFVSQP TSTTTTTNKL  60
LSDSTTTATT KFTRIGSGYF SLAQWQELEL QTLIFRHFIA GVSVPPELLH LVKKSIITSP  120
PSYYYSHPFQ QYPPHYQQAL MQSGYWGRGA MDPEPGRCRR TDGKKWRCSR DVVVGQKYCE  180
RHVHRGRSRS RKPVEIPTPA NNGSKNNNNT VFHHQAFEKM ASHAPHFSLS GHSPSTDAAL  240
HLNQRPLEST KKGPPFEAQK DDGKSSNGQI LRHFFDDWPR QLQEGDNAAT SLSISMPGRG  300
VGGGNPSSDF SLKLSTGNDY DSGPHHVSNV ERSTWGTSHQ VASMGGPLAE ALRSSTTNSS  360
PTSVLHQLAR GTTSDASYIS T*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0139771e-152BT013977.1 Lycopersicon esculentum clone 133022R, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016543482.10.0PREDICTED: growth-regulating factor 3-like
TrEMBLA0A1U8E8E40.0A0A1U8E8E4_CAPAN; Growth-regulating factor 3
TrEMBLA0A2G2YMY80.0A0A2G2YMY8_CAPAN; growth-regulating factor 3-like
STRINGPGSC0003DMT4000726280.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32832138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52910.13e-67growth-regulating factor 4