PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA10g16610
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 522aa    MW: 58935.5 Da    PI: 5.0093
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA10g16610genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.39.6e-10446496148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      r+ W+t E ++lv++v ++G g+W+ I +++     +R++ ++k++wq++l
       CA10g16610 446 RKYWSTLEVLKLVEGVSEYGVGRWNDIKKMFFqssMRRSPVDLKDKWQNLL 496
                      678***************************999**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.4E-12440500IPR009057Homeodomain-like
PROSITE profilePS5129412.492441500IPR017930Myb domain
SuperFamilySSF466894.79E-14443497IPR009057Homeodomain-like
SMARTSM007175.3E-10445498IPR001005SANT/Myb domain
PfamPF002491.1E-8446496IPR001005SANT/Myb domain
CDDcd116603.89E-16447496No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MDPFEYNWST WNESATSFQQ EPEQVVAAAS VYFASEQEAI GVEQLLAEPE YDDIVNTLLD  60
FNTCAFSGVP ESYFKEFSAS DTILTKTDCG ALQRSHNEGD KTKEKFLDGL SNGDDENHCF  120
ISCEDYLLDI ELEEDTPTLH DVTRDISCVE SVILENQLVD SDGRNCGIHV LTLSGASSSF  180
DHDATILDNF DCMSTDKLLM VSREMLGHKT PVADNQWLKP HMIVGLENQE ISEKNFSFPK  240
CSLDSSENQG ANVPPASCRN LLTVSTAFAS IFTFRRKPRV QHVKRREHIQ WNSFKCLSSV  300
AGEIQLDCPD KWDSKESAEE NIKCCGMKPG ISEQCLKCKP SRRGFGRRYY RRGATVTSQG  360
LGKRNFQVGF VQNPRGLPAE DQLIRRERQL SKDCKANRAH DDNIHSAEAQ NDPSGTLSDQ  420
SSDDTSEDDW TIGCETRGTN KDRKHRKYWS TLEVLKLVEG VSEYGVGRWN DIKKMFFQSS  480
MRRSPVDLKD KWQNLLTASC RRLQSRRGVF SSSYQLETSN L*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016544854.10.0PREDICTED: uncharacterized protein LOC107845107 isoform X2
TrEMBLA0A2G2YMW90.0A0A2G2YMW9_CAPAN; Uncharacterized protein
STRINGSolyc11g069850.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA134241214
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.13e-16TRF-like 6