PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA10g17390
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family B3
Protein Properties Length: 177aa    MW: 20310.8 Da    PI: 6.5311
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA10g17390genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3100.78.3e-3213118199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f+k ltpsdv+k++rlv+pk+ ae++       + + e++  l++ede g+ W+++++y+++s++yvltkGW++Fvk+++L++gD+v+F++++ +  + 
  CA10g17390  13 FEKPLTPSDVGKLNRLVIPKQNAEKYfplsesiNDSGEKGYLLSFEDELGKLWKFRYSYWNSSQSYVLTKGWSRFVKDKKLESGDVVLFERHRVDFDRQ 111
                 99****************************99944455889*************************************************876677777 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +++++rk
  CA10g17390 112 FIGWRRK 118
                 9999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.9E-387115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-318112IPR015300DNA-binding pseudobarrel domain
CDDcd100171.74E-2611108No hitNo description
PfamPF023622.7E-2813118IPR003340B3 DNA binding domain
SMARTSM010194.8E-2313119IPR003340B3 DNA binding domain
PROSITE profilePS5086314.11313119IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MEEIVESEKV HLFEKPLTPS DVGKLNRLVI PKQNAEKYFP LSESINDSGE KGYLLSFEDE  60
LGKLWKFRYS YWNSSQSYVL TKGWSRFVKD KKLESGDVVL FERHRVDFDR QFIGWRRKNG  120
GGGDDGGGGA GAAEYVYRPS VGGPYQNEFR HAGIIFFYEI SDNLFETIFK INLSHY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A4e-4671182113B3 domain-containing transcription factor NGA1
5os9_B4e-4671182113B3 domain-containing transcription factor NGA1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016543554.15e-92PREDICTED: B3 domain-containing protein At2g36080
SwissprotQ8RYD37e-53Y3158_ARATH; B3 domain-containing protein At3g11580
TrEMBLA0A2G2YMZ71e-125A0A2G2YMZ7_CAPAN; B3 domain-containing protein
STRINGPGSC0003DMT4000723542e-73(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38012446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11580.29e-56B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]