PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA10g19310
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C3H
Protein Properties Length: 396aa    MW: 42395.3 Da    PI: 8.1359
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA10g19310genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.56.1e-10199224227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 kt+lC++f     Ck+Gd+C+FaHg+
  CA10g19310 199 KTKLCNRFNTAEGCKFGDKCNFAHGE 224
                 8***********************96 PP
2zf-CCCH35.91.3e-11363386226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 kt+lC +fa+ G C +Gd+C+FaHg
  CA10g19310 363 KTKLCENFAK-GSCTFGDKCHFAHG 386
                 9*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.9138163IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.521138164IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.001146161IPR000571Zinc finger, CCCH-type
PfamPF146082.8150161No hitNo description
SMARTSM003560.0024197224IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.19E-7197227IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.427197225IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-12198227IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-7199224IPR000571Zinc finger, CCCH-type
SuperFamilySSF547912.19E-14263338IPR004088K Homology domain, type 1
SMARTSM003227.4E-12267337IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.102.0E-15268337IPR004088K Homology domain, type 1
PROSITE profilePS5008414.152268332IPR004088K Homology domain, type 1
PfamPF000136.8E-11270334IPR004088K Homology domain, type 1
CDDcd001053.49E-13270332No hitNo description
Gene3DG3DSA:4.10.1000.103.6E-15360392IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-8360391IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-7361387IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.248361388IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-9363386IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MDFKLMTSAT LIMANISVAT QAGKMKNYAC HLVRLLDALM LYPFRSIFLV PICAEWAKKM  60
EFSLTQALIF LLMVISFIPN CCSGWSEEYL ILFIYILGQS EEVLILLLEV GIYDSGLLNL  120
YFLHVCFASI YCFPGIIIVK PVHCTFSTAG CPFGESCHFL HYVPGGYNAV AQMMKLAPAP  180
SLRNAAAPPN SNGNAAPVKT KLCNRFNTAE GCKFGDKCNF AHGEWEIGKP TIPSQEDPRA  240
MGFGSMPGRF GGRMEPPVSG PAASFGTSAT AKISVDASLA GAIIGKSGVN SKQICRQTGA  300
KLAIRDHEAD PNLRNIELEG TFEQISQASA MVRELISSLG PVGGPGRAHG NPGGPAPPIN  360
NLKTKLCENF AKGSCTFGDK CHFAHGAAEL RKTGV*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016543677.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-87C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A1U8E9010.0A0A1U8E901_CAPAN; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A2G2YNQ20.0A0A2G2YNQ2_CAPAN; zinc finger CCCH domain-containing protein 14-like
TrEMBLA0A2G3BH470.0A0A2G3BH47_CAPCH; Uncharacterized protein
STRINGPGSC0003DMT4000609571e-166(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.15e-61C3H family protein