PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA10g19540
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 310aa    MW: 34710.5 Da    PI: 6.655
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA10g19540genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.41e-192978255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 y+GVr++  +g+WvAeIr+p++   r+r +lg+f taeeAa a+++a+++l+g
  CA10g19540 29 EYRGVRQRT-WGKWVAEIREPKK---RTRLWLGSFATAEEAAMAYDEAARRLYG 78
                69****999.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.74E-312887No hitNo description
SMARTSM003802.4E-352992IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-302987IPR001471AP2/ERF domain
PROSITE profilePS5103222.7482986IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-212987IPR016177DNA-binding domain
PfamPF008472.9E-132978IPR001471AP2/ERF domain
PRINTSPR003672.5E-103041IPR001471AP2/ERF domain
PRINTSPR003672.5E-105268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MDNYKRNPLK PWKKGPARGK GGPQNALCEY RGVRQRTWGK WVAEIREPKK RTRLWLGSFA  60
TAEEAAMAYD EAARRLYGPD AYLNLPHMRA NFNPLNKSQK FKWFSSNNNS FLSSLMPNST  120
GLLNLSAQPS VHVIHQRLQE LKRTEAAAAA AAALSMSSSV SDPKNDPVLP KYSTLPQVNK  180
EKEDVFSPHN KATVRDDHVE KPQIDLNEFL QQIGILKRDD HHHQQQQPDE SGDHDDHNSI  240
SSFAESGVSL KDDSSIAHLF GDTTSYNWDT LGAMTGIEDH EAATAEASSF VDAYNVNDEL  300
MFPSSIWNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-173086360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00411DAPTransfer from AT3G57600Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755221e-167HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016544523.10.0PREDICTED: dehydration-responsive element-binding protein 2F-like
TrEMBLA0A2G2YNS00.0A0A2G2YNS0_CAPAN; Dehydration-responsive element-binding protein 2D
STRINGPGSC0003DMT4000609701e-165(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA70982329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.13e-55ERF family protein