PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA10g19550
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 912aa    MW: 100249 Da    PI: 6.853
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA10g19550genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding223.8e-07851902146
                      TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT....TTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..tWktIartmg....kgRtlkqcksrwqk 46 
                      +++WT+ E+e l+++  ++     +Wk+I +  g    kgRt+ ++k++w++
       CA10g19550 851 KLPWTKIEEETLKEGLLRFSHYrdRWKRILEFGGdvflKGRTAGDLKDKWRN 902
                      689*************999865889*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579033.54E-9444508IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.106.5E-9453507IPR013083Zinc finger, RING/FYVE/PHD-type
SMARTSM002492.3E-6459504IPR001965Zinc finger, PHD-type
PROSITE patternPS013590460503IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500907.271846904IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.609.2E-9846905IPR009057Homeodomain-like
SuperFamilySSF466896.85E-8847904IPR009057Homeodomain-like
CDDcd116603.34E-10853905No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 912 aa     Download sequence    Send to blast
MVSEALQQSF MATKLSCTSS LPWIWVIEAL ANSSEIDTTL LINLVKRTPE ISDDLGRNAR  60
EMVSLRVLES LFVRKNSDIN NVASVPGDKI EFDPSMGCED VLRCILLEVS ASDLKTVTPD  120
MLRWDVRSFI MKKRSLLPKC CLQQLKDAIL KSKNPFSTSL KERSGLELRN HSRDSVTAVS  180
DGIEQGQDIG GVNTRHAAPS ENLDTFTPGN KNGPRENQPG STLVPVKRSF NAPTAYEIEV  240
DETKAISENS SDLCAKAAKK FKQDVVSPIQ NSVPDLISPQ RDGVPAEPHG GSQPIVRKGN  300
SEDEAHGTLK ANECLKDGSS EHAASGSVLC GGDSNINDLL PQRMSTNKKF QNIGSSRRGC  360
AELGKSGGSS LLVIQQDSRT CGFKGKLDCN LRQDLQNGEP SNVDKENIER SLESEFSSDT  420
DQYHNESTDL ASQKNDFLNS QYAQCEDSLA TADCTELNLC AKCNEGGNLF FCSSDTCPLV  480
VHESCLGSVL NFDYKGNFYC PFCAYSRAIC EYQESKKKVS VARKDLAAFI GLGDGQRSKK  540
TLPRSQGMKK HQSREDTNQQ LCRNENGKNS LNEVIQAGSG PVNRSSVRAR VMQTGAPQPE  600
VCIAHNENGR NSLNGASEAG NSPADRSSVG AQVMQTGAPQ PESSLPHNEN GRNPCNEVTE  660
ACSSPANKSS MGARVMRTGS RQPEASLPCN TNRKNSLNEV TEVGSAPADR SSVGAQVMQT  720
DSPQPEASLP EQCLVDGQQP SKSPRKCHRS RQNQSREEEL LCHDENKNKN SLEKAEEAGS  780
RPCNRNSIKA EVMHIHPPQP RVPHEHVCQG SSSIEESSEE EDEIGSKYHV QFRNPEKKYT  840
SPWIPQMRRK KLPWTKIEEE TLKEGLLRFS HYRDRWKRIL EFGGDVFLKG RTAGDLKDKW  900
RNISKVIEKA S*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016543705.10.0PREDICTED: uncharacterized protein LOC107843826
RefseqXP_016543706.10.0PREDICTED: uncharacterized protein LOC107843826
RefseqXP_016543707.10.0PREDICTED: uncharacterized protein LOC107843826
RefseqXP_016543708.10.0PREDICTED: uncharacterized protein LOC107843826
RefseqXP_016543710.10.0PREDICTED: uncharacterized protein LOC107843826
TrEMBLA0A1U8E9310.0A0A1U8E931_CAPAN; uncharacterized protein LOC107843826
TrEMBLA0A1U8EBB70.0A0A1U8EBB7_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000609730.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA340689
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49850.13e-06telomere repeat binding factor 3