PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA10g19560

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C3H

Protein Properties

Length: 696aa MW: 76046.2 Da PI: 7.0483

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA10g19560	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.7	3.6e-07	280	300	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C++Gd C +aHg CA10g19560 280 PCPEFRK-GACQRGDMCEYAHG 300 8****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF48403	1.71E-16	17	152	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	4.6E-9	53	128	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	16.255	59	159	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	3.4E-15	59	141	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.14	59	89	IPR002110	Ankyrin repeat
CDD	cd00204	4.30E-13	59	155	No hit	No description
SMART	SM00248	0.0053	94	126	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	11.007	94	129	IPR002110	Ankyrin repeat
SMART	SM00356	2.0E-5	275	301	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	9.1E-5	280	300	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.568	280	302	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	45	310	333	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 696 aa Download sequence Send to blast
MTMNNPTVGP EDTFASLLEL AANNDIEAFK RWIERDLASI HEVGLWYGRQ KGSKQMVLDH 60 RTPLMVAATY GSIDALKQIL SLPEVDVNRS CGHDKSTALH CAASGGSLNA AEAVKLLLGA 120 GADPHSKDIN GHYPIDVLVV SPNFHQVKSC LKSLLMTSAI GDCKLQVSVP TSIPNSPPCS 180 PSPEHRSPSS ALDSTSSPKS AKSNDLPVYS IPEKKEYAID SSFPDIKNDI YSSDEFRMFS 240 FKIRPCSRAY SHDWTECPFL HPGENARRRD PRKYHYSCVP CPEFRKGACQ RGDMCEYAHG 300 VFECWLHPAQ YRTRLCKDGI DCNRRVCFFA HMHEELRPLY VSTGSAVPSP CVNTAAANAM 360 DFAAAMRVIP GSPSSVPVMS PSPFTPPISP SANGISSMGW AQQNVPALHL PGSFVHSNRL 420 RPSLNARGIP AADLPTYPDF DVQQQQLLNE FSCLSQHSMS SNSLNRSARP MTLTRANLED 480 YFSAESSSPR YSDQALAQAG FSPTHNSAVC SPFQQQQRSL LSPINTNFSP KNIDNPLLQS 540 SFGVPSSGRM SPRAMEPISP RSSRVSILAQ RDRQHQFRSF SSRDLGSNPS AIVGSPADTW 600 SNWGTATGKP DWAVSTEEFG RLRQSSPFKL AKNEKEPDVS WVQSLVKESP PEMMRDECDP 660 HVSGPTGAGA DLDEGSTSSS QVDQSSAWME TKNTS*

Sequence ? help Back to Top

Protein Sequence Length: 696 aa Download sequence Send to blast

MTMNNPTVGP EDTFASLLEL AANNDIEAFK RWIERDLASI HEVGLWYGRQ KGSKQMVLDH  60
RTPLMVAATY GSIDALKQIL SLPEVDVNRS CGHDKSTALH CAASGGSLNA AEAVKLLLGA  120
GADPHSKDIN GHYPIDVLVV SPNFHQVKSC LKSLLMTSAI GDCKLQVSVP TSIPNSPPCS  180
PSPEHRSPSS ALDSTSSPKS AKSNDLPVYS IPEKKEYAID SSFPDIKNDI YSSDEFRMFS  240
FKIRPCSRAY SHDWTECPFL HPGENARRRD PRKYHYSCVP CPEFRKGACQ RGDMCEYAHG  300
VFECWLHPAQ YRTRLCKDGI DCNRRVCFFA HMHEELRPLY VSTGSAVPSP CVNTAAANAM  360
DFAAAMRVIP GSPSSVPVMS PSPFTPPISP SANGISSMGW AQQNVPALHL PGSFVHSNRL  420
RPSLNARGIP AADLPTYPDF DVQQQQLLNE FSCLSQHSMS SNSLNRSARP MTLTRANLED  480
YFSAESSSPR YSDQALAQAG FSPTHNSAVC SPFQQQQRSL LSPINTNFSP KNIDNPLLQS  540
SFGVPSSGRM SPRAMEPISP RSSRVSILAQ RDRQHQFRSF SSRDLGSNPS AIVGSPADTW  600
SNWGTATGKP DWAVSTEEFG RLRQSSPFKL AKNEKEPDVS WVQSLVKESP PEMMRDECDP  660
HVSGPTGAGA DLDEGSTSSS QVDQSSAWME TKNTS*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975449	0.0	HG975449.1 Solanum pennellii chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016543711.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30-like
Swissprot	P93755	0.0	C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBL	A0A2G2YNR9	0.0	A0A2G2YNR9_CAPAN; Zinc finger CCCH domain-containing protein 56
STRING	Solyc10g080260.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA883	24	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	CCCH-type zinc finger protein with ARM repeat domain

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] He L, et al. Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene. Plant Physiol., 2016. 171(3): p. 1675-85 [PMID:27208260]