PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA10g20440
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family HSF
Protein Properties Length: 245aa    MW: 28281.9 Da    PI: 8.297
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA10g20440genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind106.52.1e-33251162102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+y ++ed++++++isw+++g++f+v ++ efa+++Lp+ Fkh nf+SFvRQLn+YgF+k+ +++         weF+++ F++g+k+ll++i+
    CA10g20440  25 FLLKTYMLVEDPATDDIISWNSDGSAFIVRQPAEFARDLLPTLFKHCNFSSFVRQLNTYGFRKIATSR---------WEFSNDLFRRGDKDLLCDIR 112
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   rkk 
    CA10g20440 113 RKKA 116
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.0E-3518109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-5021114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.9E-3221114IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.4E-3025114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-182548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-186375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-187688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MGNLEGDQSE RTLLEYVRKS STPPFLLKTY MLVEDPATDD IISWNSDGSA FIVRQPAEFA  60
RDLLPTLFKH CNFSSFVRQL NTYGFRKIAT SRWEFSNDLF RRGDKDLLCD IRRKKAWTNK  120
QQPNKNNKKE TDNEDQRSSS STSSSSSLEY NSLIDENKRL KKENGALNSE LSSINKKCKE  180
LIDIVSMLAE NSEKEEEEKE GQIKGNKRPK LFGVRLEVEE EMEKKRKRVE FNEIASVFLS  240
QLCK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-212011415120Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2445993e-79AC244599.4 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-35a7 map 10, complete sequence.
GenBankHG9755223e-79HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016543829.11e-178PREDICTED: heat stress transcription factor B-3-like
RefseqXP_016543830.11e-178PREDICTED: heat stress transcription factor B-3-like
SwissprotO222309e-64HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A1U8EIW51e-177A0A1U8EIW5_CAPAN; Uncharacterized protein
TrEMBLA0A2G2YP501e-177A0A2G2YP50_CAPAN; heat stress transcription factor B-3-like
STRINGPGSC0003DMT4000210891e-129(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44232241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.12e-60heat shock transcription factor B3