PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA10g20650

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C3H

Protein Properties

Length: 724aa MW: 78495.5 Da PI: 6.3286

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA10g20650	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.5	4.1e-07	300	320	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C++Gd C +aHg CA10g20650 300 PCPEFRK-GACRRGDMCEYAHG 320 8****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.25.40.20	3.0E-21	15	160	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	9.17E-20	17	152	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	1.6E-10	54	128	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	8.6E-4	59	89	IPR002110	Ankyrin repeat
CDD	cd00204	1.96E-17	59	148	No hit	No description
PROSITE profile	PS50297	19.863	59	162	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.001	94	126	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	12.289	94	129	IPR002110	Ankyrin repeat
SMART	SM00356	9.5E-6	295	321	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.981	300	322	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.2E-4	300	320	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.2E-4	328	358	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	22	330	353	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 724 aa Download sequence Send to blast
MNVNHLTVET EDTLASLLEF AANNDIDAFK RWIEHDLSSV HEVGLWYGRQ KGSKQMVLEH 60 RTPLMVAAMY GSIDVLKLIL SLSGVDVNHS CGRDDSTALH CAASGGSLNA VDAVRLLVEA 120 GADPNFKDAN GHRPLDVIVT NPKVHTVKPC LENLLKTDAM GDCNPRVSMA SSNSNSPPLS 180 PSLGNRSPSS PSDTTSSPGS EKCTDLPVPS PSDTTSSPGS EKCTDLPVPS PSEKKEYPID 240 PSLPDIKNSI YSTDEFRMFS FKIKPCSRAY SHDWTECPFV HPGENARRRD PRKYHYSCVP 300 CPEFRKGACR RGDMCEYAHG VFECWLHPAQ YRTRLCKDST QCDRRVCFFA HTQEELRPLY 360 VSTGSAVLSP RSNTSAANAI DFAAAMGLIP GSPSSVSVMS PSAFTPPMSP SANGVSNMGW 420 PPQNVPALHL PGSNLQSSRL RSSLNARDIP AKDLTTLSDF DVEQQQLLNG LPCLSQSSMS 480 PNSFNRSVRP KTLTPSNLED LFSAEGSSPR YSDQALAQAG FSPTHKSAVF NQFHQQQQAM 540 LSPINTKFSP RNVDNPLLQG SFGVPSSRSM SPRGMEPISP MSSRVSILSQ GDKQHQFRSL 600 SSRDLGSSAA SAIAGSASDT WPNWGIASGE PDWAVRNEEF GRLRRSSSFE LANNGEEPDL 660 SWVQSLVKES PQEATEKSAS RVSGITGSGA DISEGSTSGS QSEQYDQLGA WMEQMKLDQL 720 IAR*

Sequence ? help Back to Top

Protein Sequence Length: 724 aa Download sequence Send to blast

MNVNHLTVET EDTLASLLEF AANNDIDAFK RWIEHDLSSV HEVGLWYGRQ KGSKQMVLEH  60
RTPLMVAAMY GSIDVLKLIL SLSGVDVNHS CGRDDSTALH CAASGGSLNA VDAVRLLVEA  120
GADPNFKDAN GHRPLDVIVT NPKVHTVKPC LENLLKTDAM GDCNPRVSMA SSNSNSPPLS  180
PSLGNRSPSS PSDTTSSPGS EKCTDLPVPS PSDTTSSPGS EKCTDLPVPS PSEKKEYPID  240
PSLPDIKNSI YSTDEFRMFS FKIKPCSRAY SHDWTECPFV HPGENARRRD PRKYHYSCVP  300
CPEFRKGACR RGDMCEYAHG VFECWLHPAQ YRTRLCKDST QCDRRVCFFA HTQEELRPLY  360
VSTGSAVLSP RSNTSAANAI DFAAAMGLIP GSPSSVSVMS PSAFTPPMSP SANGVSNMGW  420
PPQNVPALHL PGSNLQSSRL RSSLNARDIP AKDLTTLSDF DVEQQQLLNG LPCLSQSSMS  480
PNSFNRSVRP KTLTPSNLED LFSAEGSSPR YSDQALAQAG FSPTHKSAVF NQFHQQQQAM  540
LSPINTKFSP RNVDNPLLQG SFGVPSSRSM SPRGMEPISP MSSRVSILSQ GDKQHQFRSL  600
SSRDLGSSAA SAIAGSASDT WPNWGIASGE PDWAVRNEEF GRLRRSSSFE LANNGEEPDL  660
SWVQSLVKES PQEATEKSAS RVSGITGSGA DISEGSTSGS QSEQYDQLGA WMEQMKLDQL  720
IAR*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC215487	0.0	AC215487.4 Solanum lycopersicum cultivar Heinz 1706 chromosome 0 clone C00SLm0076E07, complete sequence.
GenBank	AC244298	0.0	AC244298.9 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-22l14 map 10, complete sequence.
GenBank	AC244588	0.0	AC244588.6 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-44j8 map 10, complete sequence.
GenBank	HG975449	0.0	HG975449.1 Solanum pennellii chromosome ch10, complete genome.
GenBank	HG975522	0.0	HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016543842.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30-like isoform X1
Refseq	XP_016543843.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30-like isoform X2
Refseq	XP_016543844.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30-like isoform X1
Refseq	XP_016543845.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30-like isoform X1
Swissprot	P93755	0.0	C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBL	A0A2G2YPA0	0.0	A0A2G2YPA0_CAPAN; Zinc finger CCCH domain-containing protein 30
STRING	PGSC0003DMT400021056	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA883	24	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	CCCH-type zinc finger protein with ARM repeat domain

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] He L, et al. Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene. Plant Physiol., 2016. 171(3): p. 1675-85 [PMID:27208260]