PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA10g20700

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

bHLH

Protein Properties

Length: 356aa MW: 38969.6 Da PI: 5.8546

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA10g20700	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.2	1.6e-09	198	245	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + +k a++L + +++++sLq CA10g20700 198 SHSLAERARREKINARMKLLQELVPGC----NKISGTAMVLDEIINHVQSLQ 245 8***********************9....89999*************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	7.07E-10	192	249	No hit	No description
SuperFamily	SSF47459	2.88E-15	192	263	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.2E-15	194	262	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.634	194	244	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.0E-7	198	245	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.2E-9	200	250	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MGEIPTDFNS FDEEILPITS EPGSSFTALL GLPANQAVEL LVQTPETDNK IESDKINVPY 60 YHYPPPALGP TPTPIPIFPS DIALIDRASK FSVFATTAGG GGNGVGNSPE SNSTLSNSGS 120 KALLVKQEPM DSEFNQNSSP ASSVPMGDRK SMKRKEREKK VKETTKKGKK SANDTSEEGA 180 EKLPYVHVRA RRGQATDSHS LAERARREKI NARMKLLQEL VPGCNKISGT AMVLDEIINH 240 VQSLQRQVEF LSMRLAAVNP RVDFNLDNLF AAERSGSHVE SNLPDMVVPP IWTEGQTSGN 300 GNHYQHLWHF EGFHQPVWGR LEDNSSFVTP ENSLLTYDSS ANSASLQPNQ LKMEL*

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MGEIPTDFNS FDEEILPITS EPGSSFTALL GLPANQAVEL LVQTPETDNK IESDKINVPY  60
YHYPPPALGP TPTPIPIFPS DIALIDRASK FSVFATTAGG GGNGVGNSPE SNSTLSNSGS  120
KALLVKQEPM DSEFNQNSSP ASSVPMGDRK SMKRKEREKK VKETTKKGKK SANDTSEEGA  180
EKLPYVHVRA RRGQATDSHS LAERARREKI NARMKLLQEL VPGCNKISGT AMVLDEIINH  240
VQSLQRQVEF LSMRLAAVNP RVDFNLDNLF AAERSGSHVE SNLPDMVVPP IWTEGQTSGN  300
GNHYQHLWHF EGFHQPVWGR LEDNSSFVTP ENSLLTYDSS ANSASLQPNQ LKMEL*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016543851.1	0.0	PREDICTED: transcription factor bHLH48 isoform X1
TrEMBL	A0A1U8EBQ6	0.0	A0A1U8EBQ6_CAPAN; Uncharacterized protein
TrEMBL	A0A2G2YP33	0.0	A0A2G2YP33_CAPAN; transcription factor bHLH48 isoform X1
STRING	PGSC0003DMT400021130	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4029	23	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	1e-75	bHLH family protein