PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA10g20710
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bHLH
Protein Properties Length: 379aa    MW: 41199.2 Da    PI: 8.9801
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA10g20710genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-12311356655
                 HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +++Er RR ri +++ +L+el+P+     +k  + a++L +AveYIk Lq
  CA10g20710 311 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVEYIKGLQ 356
                 689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.894305355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-15308369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.03E-11309358No hitNo description
Gene3DG3DSA:4.10.280.105.9E-14310366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-12311361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-9311356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MDSSEFAKNQ TSSGLLRFRS APSSFLENFI DGVGNNANIS IENKGLGSKF NLGNQLLVSQ  60
DSLDSKVLCA NLPPQYPRQN SSTSSVHVVG SMEGGGGGYR VLGSSSNSNN IHQGGQNKLV  120
GSNLMRQNSS PAGLFSQLNS LNGYATLKGG TGGYRMANGV NGDSSPSSSR LKGHFSFPSV  180
TPSSLGMLSR ILEVDNESSI ATAFVDDEKR GDANSEAQLY NMGFPFTSWT DSSQFQQTLI  240
GHKRELDSEE NKQFANAQIE ELGNRPPILS HHLSLPKTPA DIAAMEKLLH FQDTIPCKIR  300
AKRGCATHPR SIAERVRRTR ISERMRKLQE LVPNMDKQTN TADMLDLAVE YIKGLQKQYK  360
VLTDCRANCK CSAMQKPD*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754495e-76HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016543858.10.0PREDICTED: transcription factor bHLH130
TrEMBLA0A1U8E9G30.0A0A1U8E9G3_CAPAN; Transcription factor bHLH80
TrEMBLA0A2G2YP450.0A0A2G2YP45_CAPAN; transcription factor bHLH130
STRINGPGSC0003DMT4000210620.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51942437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.11e-85bHLH family protein